PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_10585_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Protein Properties

Length: 240aa MW: 27825.3 Da PI: 7.7452

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_10585_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.9	1e-14	108	195	1	96
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k +++s+v+ +l lp f ++h + t+tl de+ +++ k+ +k++ l++GW++F +++L +gD +vF+l++ ++f + Neem_10585_f_3 108 FVKPMLQSHVTGGFWLGLPVYFGKNHlpH----YDETITLVDEEENEFPTKYLADKTG----LSGGWRGFSIDHELVDGDALVFQLVKPTTF--K 192 89*******************888433....4459***********666666....*********************9986666..5 PP EEE CS B3 94 vkv 96 v + Neem_10585_f_3 193 VFI 195 544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.53E-24	101	198	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	5.0E-20	101	198	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.06E-25	106	197	No hit	No description
SMART	SM01019	5.2E-19	108	200	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.1E-13	108	196	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.364	108	199	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MVESKLTYEE CRRQRLEENK KRMEELKLHV LAQSIKTPSP KPSPLKKRFS KQQAASVPDP 60 FEPLLTRRRG YQQRNLLNRV YASDEERAYA IERAEEVQSG LDSQYPSFVK PMLQSHVTGG 120 FWLGLPVYFG KNHLPHYDET ITLVDEEENE FPTKYLADKT GLSGGWRGFS IDHELVDGDA 180 LVFQLVKPTT FKVFIIRAYE LEDNKNKDNT KEETNSEDKN EDSDANHLRR SAKRTRSGKM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006487088.1	1e-128	B3 domain-containing protein At3g19184-like isoform X2
Swissprot	Q1G3M3	5e-78	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	A0A067DTV8	1e-127	A0A067DTV8_CITSI; Uncharacterized protein (Fragment)
STRING	XP_006487087.1	1e-126	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3744	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	5e-65	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]