PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_10612_f_5
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB
Protein Properties Length: 234aa    MW: 26324.1 Da    PI: 7.033
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_10612_f_5genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.65.9e-082164344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      W   Ed+ + da    + +   +W +Ia++++ g+++ ++k+++
   Neem_10612_f_5 21 HWNRSEDKVFEDALVTVPEDcpdRWQKIASKLP-GKSPRDVKEHY 64
                     5999**************99*************.**********9 PP
2Myb_DNA-binding45.41.9e-14114158347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
   Neem_10612_f_5 114 PWTEEEHKLFLIGLSKFGKGDWRSISRNVVVTRTPTQVASHAQKY 158
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512947.3971472IPR017930Myb domain
SuperFamilySSF466897.9E-111668IPR009057Homeodomain-like
SMARTSM007172.1E-71870IPR001005SANT/Myb domain
PfamPF002494.9E-62165IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-52165IPR009057Homeodomain-like
CDDcd001671.78E-72268No hitNo description
PROSITE profilePS5129420.157107163IPR017930Myb domain
SuperFamilySSF466897.9E-17109163IPR009057Homeodomain-like
TIGRFAMsTIGR015575.2E-17110162IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.1E-11111157IPR009057Homeodomain-like
SMARTSM007178.2E-11111161IPR001005SANT/Myb domain
PfamPF002492.2E-12114158IPR001005SANT/Myb domain
CDDcd001675.07E-10114159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MYQQDINSNS FPMTQSSSTT HWNRSEDKVF EDALVTVPED CPDRWQKIAS KLPGKSPRDV  60
KEHYEALVHD VSEIDSGRVE LPSYPDDSDW DSPAQISFAP KHKHGEPERK KGTPWTEEEH  120
KLFLIGLSKF GKGDWRSISR NVVVTRTPTQ VASHAQKYFL RQSNGAKRER KRSSIHDITT  180
VDNSSVGVPI DQNWIPSPGG AGHQQPPALQ QFPPPSQFPS QGGSLGYQNY GFPM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-1522841173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00055PBMTransfer from AT5G04760Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445756.21e-135transcription factor SRM1
RefseqXP_006485458.11e-135transcription factor SRM1
SwissprotQ8S9H72e-57DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2H5PNP11e-135A0A2H5PNP1_CITUN; Uncharacterized protein
TrEMBLV4U9T91e-135V4U9T9_9ROSI; Uncharacterized protein
STRINGXP_006445756.11e-136(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51272750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.11e-71MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]