PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_10658_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

MIKC_MADS

Protein Properties

Length: 247aa MW: 28103.1 Da PI: 7.825

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_10658_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	95.1	3.2e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +rienk nrqvtfskRrng+lKKA+ELS LCdaevaviifss+gkl+e++s Neem_10658_f_1 9 ERIENKVNRQVTFSKRRNGLLKKAYELSLLCDAEVAVIIFSSHGKLFEFAS 59 69***********************************************86 PP
2	K-box	45.6	3.1e-16	124	180	32	88
K-box 32 qreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 + ++ h+lGedL++L +keLq++e+qL++ l R++K++++++q+e+lq+k e + Neem_10658_f_1 124 EINLLHFLGEDLGTLGVKELQKIEKQLDRTLALARQRKTDIMVQQLEKLQQKLIEEE 180 56788***********************************************87755 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.0E-39	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	31.847	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	6.21E-43	2	76	No hit	No description
SuperFamily	SSF55455	6.8E-33	2	83	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-30	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.6E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-30	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-30	38	59	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS51297	10.761	86	193	IPR002487	Transcription factor, K-box
Pfam	PF01486	4.9E-12	120	175	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MGRGKVVLER IENKVNRQVT FSKRRNGLLK KAYELSLLCD AEVAVIIFSS HGKLFEFASN 60 DVAKILERYR QCCYTSPASY INEQDTEALF PEILRLRATC ESLQRTQRLN FNLSFCELNN 120 HNNEINLLHF LGEDLGTLGV KELQKIEKQL DRTLALARQR KTDIMVQQLE KLQQKLIEEE 180 GQCVEAVREP GTGRSNIDHV RMMNPSPSAP NLQIGYHQFS LEDRASIEAG VSLAAGRFNP 240 NPAQGWL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6bz1_A	1e-23	1	97	1	91	MEF2 CHIMERA
6bz1_B	1e-23	1	97	1	91	MEF2 CHIMERA
6bz1_C	1e-23	1	97	1	91	MEF2 CHIMERA
6bz1_D	1e-23	1	97	1	91	MEF2 CHIMERA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006490461.1	4e-80	MADS-box transcription factor 6
Swissprot	Q8LLR1	2e-65	MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBL	A0A2H5NMK9	9e-79	A0A2H5NMK9_CITUN; Uncharacterized protein
STRING	XP_006490461.1	2e-79	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM29565	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	9e-50	AGAMOUS-like 6

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]