PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_10694_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

M-type_MADS

Protein Properties

Length: 219aa MW: 24379.7 Da PI: 8.9097

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_10694_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	59.3	4.8e-19	15	61	1	47
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 krien+ r +tfskRr gi KKA+EL +L++aev v++fs++gk + Neem_10694_f_1 15 KRIENEDDRLITFSKRRSGIYKKASELVTLTGAEVGVVVFSPSGKPF 61 79******************************************955 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.2E-29	7	66	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	24.488	7	67	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.08E-33	8	76	No hit	No description
SuperFamily	SSF55455	5.1E-26	8	85	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.2E-18	9	29	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.7E-23	16	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.2E-18	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.2E-18	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MAEKKTKGRQ KIEMKRIENE DDRLITFSKR RSGIYKKASE LVTLTGAEVG VVVFSPSGKP 60 FSFGHPSIEA VANRFMGVHP PPNDNTHPLV EAHRQVRINE LNQLHNDLLR QLDAEKERGK 120 VLKQMTKGKE TQQGWWEAPI EELNLQQLLQ MNTSFDELHK ALLQKLNEKD PVGASSSVLP 180 TMNPGQAQAG AANPFAPNPD EFDPSGALPF SYGFKAGQL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006492961.1	1e-95	agamous-like MADS-box protein AGL62
TrEMBL	V4RKC3	2e-94	V4RKC3_9ROSI; Uncharacterized protein
STRING	XP_006492961.1	4e-95	(Citrus sinensis)
STRING	XP_006421343.1	4e-95	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	6e-41	AGAMOUS-like 62