PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_10870_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 454aa    MW: 51082.8 Da    PI: 6.2528
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_10870_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.67e-16252298354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h   Er+RR+++N++f  Lr+l+P++     +K++Ka+++  A+eYIk+L
  Neem_10870_f_2 252 TKHYTTERQRREEMNDRFKALRSLVPNP-----TKNDKASVVGDAIEYIKEL 298
                     7899************************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.41E-17246312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.117249298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.50E-13250300No hitNo description
PfamPF000106.1E-13252298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-15252307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-12255304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MYEEAGCFDP NSIAQAADNG FSQSLANSHN PADHELFYPR QHHQTNSVPL QEDAAVVAMK  60
LELQKHLAFN VENCHSNTTH LIHDPNQILP YDHSNWDTSV KLYEMGFNHH HQDETQQNGH  120
QSFNTDISSS VQDIPYAQTP DLLNLLHLPR CTTSSLLPGS SISFTNPNHK PPLGFTGDLP  180
HLLRSGNYSN LSLHGYSLTE STGGANSLFG DERDTSGELY EDGDGGHFDN GALEFTRDMA  240
CIGRGREGGK TTKHYTTERQ RREEMNDRFK ALRSLVPNPT KNDKASVVGD AIEYIKELLR  300
TINDLKLLVE KKRCARERRK RHKTEEDEGC NIKPFVDPDQ PYNPSLRSSW LQRKSKDTEV  360
DVRIINDEVT IKLFQRKKID CLLFVSKVLE ELQLDLRHVA GGHIGDHYSF LFNAKIYEGS  420
SVYAGAVANK LIEVMDKQYA AVPQPSAVAI SSNE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024042786.11e-179transcription factor bHLH91 isoform X2
RefseqXP_024042787.11e-179transcription factor bHLH91 isoform X2
RefseqXP_024949273.11e-179transcription factor bHLH91-like isoform X1
RefseqXP_024949278.11e-179transcription factor bHLH91-like isoform X2
RefseqXP_024949279.11e-179transcription factor bHLH91-like isoform X1
RefseqXP_024949282.11e-179transcription factor bHLH91-like isoform X1
TrEMBLA0A067HC601e-176A0A067HC60_CITSI; Uncharacterized protein
TrEMBLA0A2H5Q0391e-178A0A2H5Q039_CITUN; Uncharacterized protein
TrEMBLV4U9881e-176V4U988_9ROSI; Uncharacterized protein
STRINGXP_006464331.11e-179(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.11e-83bHLH family protein