PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_10870_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 468aa    MW: 52372.8 Da    PI: 5.1941
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_10870_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.72.8e-15270317254
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h   Er+RR+++N++f+ Lr+l+P++     +K++ a+++  A+eYIk+L
  Neem_10870_f_3 270 TTKHYTTERQRREQMNDKFAALRSLVPNP-----TKNDRASVVGDAIEYIKEL 317
                     57899************************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-17265330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.622268317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.36E-13269321No hitNo description
PfamPF000102.6E-12271317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-15271329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-12274323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MYEETGGFDP SSVAQGADDG FSQSLPDSHN TTADELSYPP QHHHSNSAPV QEDAAVVAIE  60
LELQKHLTFD VENCHSNNTH LIHNPNQVLP YDHSNWDTAV SHDEMGFSHH HQDDPQQNGR  120
QSFNTDISSS LQDSPYGQTP DLLNLLHLPR CSTSSLLPDS SISFTNPNHR TPLSFSGDVP  180
TSDVPPVLYD PLFHLNLPPQ PPLFRELFQS IPHGYSLTAS RGGANSLFGD ERDTSGALYE  240
DGDGGHFDNG VLEFTRDMAC IGRGREGGRT TKHYTTERQR REQMNDKFAA LRSLVPNPTK  300
NDRASVVGDA IEYIKELLRT VNELKLLVEK KRSARERSKR QKTEDDDGCD IKPLVDQDQA  360
YNPSLRSSWL QRKSKDSEVD VRIIDDEVTI KLVQRKKIDC LLFVSKVLDE LQLDLHHVAG  420
GHIGDYYSFL FNTKIYEGSS VYAGAIANKL IEVMDRQYAA IAPTNCSY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024042786.10.0transcription factor bHLH91 isoform X2
RefseqXP_024042787.10.0transcription factor bHLH91 isoform X2
RefseqXP_024949273.10.0transcription factor bHLH91-like isoform X1
RefseqXP_024949279.10.0transcription factor bHLH91-like isoform X1
RefseqXP_024949282.10.0transcription factor bHLH91-like isoform X1
TrEMBLA0A067HC600.0A0A067HC60_CITSI; Uncharacterized protein
TrEMBLA0A2H5Q0390.0A0A2H5Q039_CITUN; Uncharacterized protein
TrEMBLV4U9880.0V4U988_9ROSI; Uncharacterized protein
STRINGXP_006464331.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.12e-92bHLH family protein