PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_10942_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GRAS
Protein Properties Length: 755aa    MW: 82541.9 Da    PI: 6.2646
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_10942_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS413.91.5e-1263767332374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +lLl+cAeavs++++e+a+++L ++sel++p+g++ qR+aayf eA++arl++s+ ++y+alp+ +    ++++ ++a+++f+ +sP++kfsh+
  Neem_10942_f_2 376 LTLLLQCAEAVSADNFEEANKMLLEISELSTPYGTSAQRVAAYFSEAMSARLVSSCLGIYAALPSLPHC--HTQKLVSAFQVFNGISPFVKFSHF 468
                     579************************************************************999987..5889999***************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                     taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s e+le+tg+rL++fAe+lg+pfef + +a+++ +l++
  Neem_10942_f_2 469 TANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGT----SMEALEATGKRLSDFAEKLGLPFEFCP-IAEKVGNLDP 558
                     *****************************************************....***************************.7********* PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                     e+L+v+++Ea+aV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++  ++sFl rf+ea++yysalfdsl a++++eseer++vE
  Neem_10942_f_2 559 EKLNVSKREAVAVHWLQ--HSLYDVTGSDNN----TLWLLQRLAPKVVTVVEQDLSP-AGSFLGRFVEAIHYYSALFDSLGASYGEESEERHVVE 646
                     ****************9..999999999999....********************98.899********************************** PP

            GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++ll+rei+nv+a  g +r  + + +++Wre+l+++GFk ++l  +aa+qa lll +++sdgy++ e+sg+l lgWkd  L+++SaWr
  Neem_10942_f_2 647 QQLLSREIRNVLAVGGPSRSGEVK-FHNWREKLQQSGFKGISLAGNAATQATLLLGMFPSDGYTLVEDSGTLKLGWKDLCLLTASAWR 733
                     ******************888776.**************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.497349713IPR005202Transcription factor GRAS
PfamPF035145.1E-124376733IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 755 aa     Download sequence    Send to blast
MAAYGLLGDK EQDSQVNGNN NDNIDSGSPT MTSASNSTGS NDRSSVDGKM LRKRMASEME  60
VQLNGDYYRR FSRRNNANST PTATPLLNYS TINSMNMNMN NLPSSTNLTS MTSVGSGFLS  120
TPTSASARAL STANLSCIDN LSPNSQPQPP PPAVCGFSGL PLFPPERNRS TSNNLIPAAT  180
SNLTCVSSIS SPSMEDSSAT AWIDGIIKDL INNSTNVSIP QLIHNVREII YPCNPNLAVL  240
LEYRLRSITE PLERRKEALP LQLLQRQYNI NHQQQGSSGL TLNLDSGLDN VPNYSLQDSS  300
YLNWGLTQLP PPISQGNQQI HDHHQSVTAA LSLNQTITAP ATAPPPISSV IISSSIREKK  360
EEIRQQKRDE EGLHLLTLLL QCAEAVSADN FEEANKMLLE ISELSTPYGT SAQRVAAYFS  420
EAMSARLVSS CLGIYAALPS LPHCHTQKLV SAFQVFNGIS PFVKFSHFTA NQAIQEAFER  480
EERVHIIDLD IMQGLQWPGL FHILASRPGG PPYVRLTGLG TSMEALEATG KRLSDFAEKL  540
GLPFEFCPIA EKVGNLDPEK LNVSKREAVA VHWLQHSLYD VTGSDNNTLW LLQRLAPKVV  600
TVVEQDLSPA GSFLGRFVEA IHYYSALFDS LGASYGEESE ERHVVEQQLL SREIRNVLAV  660
GGPSRSGEVK FHNWREKLQQ SGFKGISLAG NAATQATLLL GMFPSDGYTL VEDSGTLKLG  720
WKDLCLLTAS AWRPLIHANN INVIAATTAH HRYSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.03597343380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006429683.20.0protein SCARECROW
RefseqXP_006481279.10.0protein SCARECROW
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLV4S6380.0V4S638_9ROSI; Uncharacterized protein
STRINGXP_006429683.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81642640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein