PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_10948_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

CAMTA

Protein Properties

Length: 937aa MW: 104407 Da PI: 6.0219

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_10948_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	179.5	4.2e-56	12	126	3	116
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 ke ++rwlk+ e++ iL+n+ek++lt+e+++rp+sgs++L+n++++r+frkDG++w+kkkdg++v E+he+LKvg+ve+l+cyYah+e+np+fqr Neem_10948_f_1 12 KEaQSRWLKPAEVLLILQNHEKYQLTQEPPQRPTSGSVFLFNKRVLRFFRKDGHNWRKKKDGRAVGEAHERLKVGNVEALNCYYAHGEQNPNFQR 106 5669***************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhyle 116 r+yw+L+ ++e+ivlvhy+e Neem_10948_f_1 107 RSYWMLDPTYEHIVLVHYRE 126 ****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	84.013	7	133	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	7.8E-79	10	128	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.8E-48	13	126	IPR005559	CG-1 DNA-binding domain
CDD	cd00102	4.13E-4	374	457	No hit	No description
Gene3D	G3DSA:2.60.40.10	8.2E-7	374	456	IPR013783	Immunoglobulin-like fold
Pfam	PF01833	1.8E-6	374	450	IPR002909	IPT domain
SuperFamily	SSF81296	1.64E-16	374	457	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:1.25.40.20	2.6E-17	568	664	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	17.9	570	662	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	8.24E-18	572	664	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.54E-11	575	662	No hit	No description
Pfam	PF12796	4.0E-9	585	663	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	4.4E-4	603	632	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.381	603	635	IPR002110	Ankyrin repeat
SMART	SM00248	1800	642	671	IPR002110	Ankyrin repeat
SMART	SM00015	35	720	742	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.723	721	750	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	2.47E-7	773	826	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	2	778	800	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.004	779	808	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.013	781	799	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	9.1E-4	801	823	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.285	802	827	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	5.2E-5	804	823	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 937 aa Download sequence Send to blast
MQAGYDIEDL FKEAQSRWLK PAEVLLILQN HEKYQLTQEP PQRPTSGSVF LFNKRVLRFF 60 RKDGHNWRKK KDGRAVGEAH ERLKVGNVEA LNCYYAHGEQ NPNFQRRSYW MLDPTYEHIV 120 LVHYREITEG RPSPGSVALS PGASSTFILS PNTTQNPGST SVISDLYEPH QSLSSPSSVE 180 VTSEVASKDN GVDSKGEISG SETEVSQALR KLKEQLSLND DMFEEIHSFS KQDLEYKNQI 240 PKQDQRGVVL QSPEYLVQEE YKGGHAGFQG HSNNLLLEQD AGNAGNHLHQ LYGHGYTDRS 300 KEPLFWKDML DSCDNSAGIE SQNSLSSSWR GAAEEQEFSC WPNFNGSNIE HYHIGVPHEA 360 DLRLTVAQKQ KFAIREICPD WGYANEATKV IIVGSFLCEP SESGWSCMFG VTEVPLQIIQ 420 EGVIRCEAPP HLPGKVPLCI TSGNRESCSE VKEFDYRLEN SSYTHDNLSQ KEATKSHDEL 480 LLLVRFVQML LADSSLLKGE EVDSEYLLRR IKADDYLWGQ VIDALLVGSG TSSDTIDWLL 540 QELLKDKLQQ WLSSKSMGES EQPGCSLSKK EQAIIHMVAG LGFEWALNPI LSQGVNINFR 600 DINGWTALHW AARFGREKMV AALLASGASA GAVTDPNAQD PTGKTPASIA ASSGHKGLAG 660 YLSEVALTSH LSSLTLEESE LSKGSAEVEA EITVNSVSKA SLSTSEDQLS LKDTLAAVRN 720 AAQAAARIQS AFRAHSFRMR QLTEAAAADA FIDEYGINAD DIPGLSALSK RAFRNARYYN 780 SAALSIQKKY RGWKGRKDYL AIRQKVVKIQ AHVRGYQVRK KYKVIWAVSV LDKVILRWRR 840 KGVGLRGFRP EAESTDSSED DDILKVFRRQ KVDAAVDEAV SRVLSMVDSP EARQQYRRML 900 ERYRQAKAEL GEKGDAVASM SAGDTVDMDD DDSYLFA

Sequence ? help Back to Top

Protein Sequence Length: 937 aa Download sequence Send to blast

MQAGYDIEDL FKEAQSRWLK PAEVLLILQN HEKYQLTQEP PQRPTSGSVF LFNKRVLRFF  60
RKDGHNWRKK KDGRAVGEAH ERLKVGNVEA LNCYYAHGEQ NPNFQRRSYW MLDPTYEHIV  120
LVHYREITEG RPSPGSVALS PGASSTFILS PNTTQNPGST SVISDLYEPH QSLSSPSSVE  180
VTSEVASKDN GVDSKGEISG SETEVSQALR KLKEQLSLND DMFEEIHSFS KQDLEYKNQI  240
PKQDQRGVVL QSPEYLVQEE YKGGHAGFQG HSNNLLLEQD AGNAGNHLHQ LYGHGYTDRS  300
KEPLFWKDML DSCDNSAGIE SQNSLSSSWR GAAEEQEFSC WPNFNGSNIE HYHIGVPHEA  360
DLRLTVAQKQ KFAIREICPD WGYANEATKV IIVGSFLCEP SESGWSCMFG VTEVPLQIIQ  420
EGVIRCEAPP HLPGKVPLCI TSGNRESCSE VKEFDYRLEN SSYTHDNLSQ KEATKSHDEL  480
LLLVRFVQML LADSSLLKGE EVDSEYLLRR IKADDYLWGQ VIDALLVGSG TSSDTIDWLL  540
QELLKDKLQQ WLSSKSMGES EQPGCSLSKK EQAIIHMVAG LGFEWALNPI LSQGVNINFR  600
DINGWTALHW AARFGREKMV AALLASGASA GAVTDPNAQD PTGKTPASIA ASSGHKGLAG  660
YLSEVALTSH LSSLTLEESE LSKGSAEVEA EITVNSVSKA SLSTSEDQLS LKDTLAAVRN  720
AAQAAARIQS AFRAHSFRMR QLTEAAAADA FIDEYGINAD DIPGLSALSK RAFRNARYYN  780
SAALSIQKKY RGWKGRKDYL AIRQKVVKIQ AHVRGYQVRK KYKVIWAVSV LDKVILRWRR  840
KGVGLRGFRP EAESTDSSED DDILKVFRRQ KVDAAVDEAV SRVLSMVDSP EARQQYRRML  900
ERYRQAKAEL GEKGDAVASM SAGDTVDMDD DDSYLFA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024041284.1	0.0	calmodulin-binding transcription activator 4 isoform X3
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	V4STS8	0.0	V4STS8_9ROSI; Uncharacterized protein
STRING	XP_006438003.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6476	26	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]