PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_10_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 381aa MW: 42613.7 Da PI: 8.1306

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_10_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.8	1.2e-10	87	116	2	30
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.a 30 r +h+ E+rRR++iN++f+ Lre++P+ + Neem_10_f_2 87 RSKHSVTEQRRRSKINERFQILREIIPHsD 116 899*************************44 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.722	85	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-15	86	165	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.6E-8	87	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.77E-8	87	147	No hit	No description
SuperFamily	SSF47459	1.57E-10	87	168	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MPFRPTPLQK QPYNICPSGC SNSRRGDEKH LSFRFVIKQR MRTAKGNREE EDYDDEEFMS 60 KKEAASTINN NTNSKDGKNS DKASVIRSKH SVTEQRRRSK INERFQILRE IIPHSDQKER 120 YCIIPVGGTY WNLCVIDYVQ FLQDKVQKYE GSYQDWSSEP TKLMPWRNSH WRVQSFVGHP 180 HSIKNGSGPG SMFPGKFDEN SISIPPTMLT SIQNPVESDP SRDVACKSAD RQPELANKGI 240 SLPMPMQGNM TAPVRTDGAL VHPLQRPVSD AQSNECPTAT DTMNQQEELT VEGGTISISS 300 IYSQGLLNNL TQALEGAAID LSQANISVQI DLGKRANRGL MSQASIAKDL EIHPSTNQAM 360 AKLRDVSSGE DSDQGQKRLK T

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MPFRPTPLQK QPYNICPSGC SNSRRGDEKH LSFRFVIKQR MRTAKGNREE EDYDDEEFMS  60
KKEAASTINN NTNSKDGKNS DKASVIRSKH SVTEQRRRSK INERFQILRE IIPHSDQKER  120
YCIIPVGGTY WNLCVIDYVQ FLQDKVQKYE GSYQDWSSEP TKLMPWRNSH WRVQSFVGHP  180
HSIKNGSGPG SMFPGKFDEN SISIPPTMLT SIQNPVESDP SRDVACKSAD RQPELANKGI  240
SLPMPMQGNM TAPVRTDGAL VHPLQRPVSD AQSNECPTAT DTMNQQEELT VEGGTISISS  300
IYSQGLLNNL TQALEGAAID LSQANISVQI DLGKRANRGL MSQASIAKDL EIHPSTNQAM  360
AKLRDVSSGE DSDQGQKRLK T

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00219	DAP	Transfer from AT1G69010	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006484262.1	0.0	transcription factor BIM2 isoform X1
Swissprot	Q9CAA4	1e-108	BIM2_ARATH; Transcription factor BIM2
TrEMBL	V4STA9	0.0	V4STA9_9ROSI; Uncharacterized protein
STRING	XP_006484262.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5987	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	1e-110	BES1-interacting Myc-like protein 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]