PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_11047_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

MYB_related

Protein Properties

Length: 281aa MW: 32076.9 Da PI: 6.5526

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_11047_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.4	4.3e-10	10	61	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqky 47 W +E++ll++avk++G +W+++a ++ + t+ ck +++++ Neem_11047_f_1 10 TWGSWEELLLACAVKRHGFQNWDSVAMEIRtktslpqLQTTAQCCKQKYHDL 61 7*****************************7777776666677777777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-4	4	63	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.39E-5	4	63	IPR009057	Homeodomain-like
SMART	SM00717	4.7E-4	7	64	IPR001005	SANT/Myb domain
CDD	cd00167	6.87E-5	10	62	No hit	No description
Pfam	PF00249	1.1E-8	10	58	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MSDEKTTSTT WGSWEELLLA CAVKRHGFQN WDSVAMEIRT KTSLPQLQTT AQCCKQKYHD 60 LKRRFKAAAD NIRWLEEQLR KVRVDELKQE LKVKRLEEER DNTINIQQKP DLDNKNTTSL 120 NDKMVEPLPE KSEDKLLKVS RREEESDREN RSVNESNSTG LSGKIVGGGV EKEELIKIEP 180 EPVRSGGEGG PVEEESESKE SEELGDSVTQ LSSDVQSSAS FGSKRTRKRD SGDANAIEDK 240 EADAKSEPLI RLLQKIRTHK HASMFERRLK SQRNLMIRIT P

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006439033.2	5e-71	uncharacterized protein LOC18045544
TrEMBL	A0A2H5NAN0	7e-70	A0A2H5NAN0_CITUN; Uncharacterized protein
STRING	cassava4.1_011862m	2e-71	(Manihot esculenta)
STRING	XP_006439033.1	1e-70	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4123	19	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44430.1	2e-27	DNA-binding bromodomain-containing protein