PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_1109_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 519aa    MW: 56328.4 Da    PI: 8.2737
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_1109_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.30.00032240257219
                    HHHHHHHHHHHHHHHHHH CS
            HLH   2 rrahnerErrRRdriNsa 19 
                    r +h++ E+rRR++iN++
  Neem_1109_f_3 240 RSKHSATEQRRRSKINDR 257
                    889*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.3E-4235257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.72E-6238291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.88E-4240271No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MELPRSRPFG TEGRKPTHDF LSLYSNSTVQ QDPRPPSQGS DSADDASAGA YLKTHDFLQV  60
GKTQAKEENT VEISSTVEKP PPPAPPPASS VEHILPGGIG TYSISHVSYY GPKVPKPEGT  120
ILPVAQASST EKNDENSNCS SYTGSGFSLW EESAVKKGKT GKENVGERSN IGRGNFVASG  180
FKSQSFIEMI KSAKGSTIDE DLDDEEEFIL KKENSTTTTH KELRVKVDGK SNDQKPNTPR  240
SKHSATEQRR RSKINDRQVI EYIQFLQEKV HKYEGPYTGW NQEPTKLVPW RNNQKPAESY  300
VDQSRGINNG SGPTLVFAAK LDEKKILVSP ATPGSAQNQV ESDMSTATTF KTTDPQPGLT  360
NKPMPFPMSL QPNCYNPVRN GGVGAYVPAR LASDAENMTS LPQAQLCNTR SCTSDRAAAN  420
DKTKEEGLNV EGGTINISTV YSQGLLNTLT QALQSSGVDL SQASISVQID LGKRATGRPI  480
SPALTVKDNN EVAARTTGSR VGNFEQSDQA LKKRRTDKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006485716.10.0transcription factor BIM1 isoform X1
TrEMBLA0A2H5Q4P20.0A0A2H5Q4P2_CITUN; Uncharacterized protein
STRINGXP_006485716.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69672744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.46e-96bHLH family protein