PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_11145_a_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family HSF
Protein Properties Length: 96aa    MW: 11064.6 Da    PI: 4.5205
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_11145_a_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind83.72.6e-261674260
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
    HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                    Flkk ye+++d++++++isws+n+ sfv++d++ef+ ++LpkyFkhsnfaSF+RQLn+Y
  Neem_11145_a_3 16 FLKKCYEMVDDQSTDSIISWSQNNVSFVIWDMTEFSVQLLPKYFKHSNFASFIRQLNIY 74
                    9********************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-26975IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-191291IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.36E-231283IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.7E-211674IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-151639IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-155466IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-156779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MVKSNDDGSG ASVAPFLKKC YEMVDDQSTD SIISWSQNNV SFVIWDMTEF SVQLLPKYFK  60
HSNFASFIRQ LNIYVSFFVF LFDLMGNSLF SFYAPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-178741787Heat shock factor protein 1
5d5v_B5e-178741787Heat shock factor protein 1
5d5v_D5e-178741787Heat shock factor protein 1
5hdk_A3e-171374768Heat shock factor protein 2
5hdk_B3e-171374768Heat shock factor protein 2
5hdk_C3e-171374768Heat shock factor protein 2
5hdk_D3e-171374768Heat shock factor protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006448139.12e-37heat stress transcription factor A-8
SwissprotQ9S7U52e-26HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLA0A067FBG65e-36A0A067FBG6_CITSI; Uncharacterized protein
TrEMBLA0A2P2JGW84e-39A0A2P2JGW8_RHIMU; Uncharacterized protein
TrEMBLV4W5N35e-36V4W5N3_9ROSI; Uncharacterized protein
STRINGXP_006448138.18e-37(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.18e-29heat shock transcription factor A8