PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_11155_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 223aa    MW: 24973.2 Da    PI: 6.8016
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_11155_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.72.4e-121954137
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                     rg W + Ede+l ++v+q+G  +W++Ia++++ gR++
   Neem_11155_f_1 19 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ-GRSD 54
                     899*****************************.**98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.09E-91455IPR009057Homeodomain-like
PROSITE profilePS5129412.5881464IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-121554IPR009057Homeodomain-like
SMARTSM007170.00951864IPR001005SANT/Myb domain
PfamPF002497.7E-111954IPR001005SANT/Myb domain
CDDcd001677.61E-102254No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MEDSGAGSSD DATKSTCPRG HWRPAEDEKL RQLVEQYGAQ NWNSIAEKLQ GRSDRTFAVS  60
PPSSSLSWTF GPPMVTPSNN NSSSVDLPRK EGRDFFISSS NYFPQESSKV SDQSTLHRHY  120
QNSSVYSSYR GANAFGVSNY RKVVPSPFGF LKVDDLDHDH DHDHQSKGMM KKDKVKFSEN  180
SAAYSNFIRL STSQQAHQGD HESIKHHHEE VPFIDFLGVG ITS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4397046e-33AM439704.1 Vitis vinifera contig VV78X040825.14, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434346.12e-48transcription factor MYB115
TrEMBLA0A2H5PI505e-47A0A2H5PI50_CITUN; Uncharacterized protein
TrEMBLV4TD415e-47V4TD41_9ROSI; Uncharacterized protein
STRINGXP_006434346.19e-48(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.12e-16myb domain protein 69