PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_11210_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GATA
Protein Properties Length: 288aa    MW: 32570.6 Da    PI: 9.4768
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_11210_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.72.7e-17217251135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C +  Tp+WR gp g+ktLCnaCG++y++ +l
  Neem_11210_f_1 217 CTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRL 251
                     *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.596211247IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.9E-14211248IPR013088Zinc finger, NHR/GATA-type
SMARTSM004015.1E-14211265IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-15212275No hitNo description
CDDcd002023.53E-11216263No hitNo description
PfamPF003205.6E-15217251IPR000679Zinc finger, GATA-type
PROSITE patternPS003440217242IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MDFCRNVSAS GDQYQQEQVL SSPPCSKLGA LTSNPLDDLF PAHNTKTVYQ AQEYDYQRLK  60
QGTKNVQNGS TTTVTAPKSP KPLQNKPRQI TPPSLEKFVV PGKARSKRKR TSSCRTSETR  120
SLSSWTQNFN PESHLFELTS SDPPLLQQAY WLADSELILP KKEDNTNTPN TNTNNNRVKV  180
NYEENTETKE ENQDEVEELE KNVVEGKEVG QQQPRRCTHC LAQRTPQWRA GPLGPKTLCN  240
ACGVRYKSGR LLPEYRPAKS PTFVSYLHSN SHKKVMEMRM ALMSPAPK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007030701.11e-107PREDICTED: GATA transcription factor 2
TrEMBLA0A061F2V51e-106A0A061F2V5_THECC; GATA transcription factor 9, putative
STRINGEOY112031e-106(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17095911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.12e-36GATA transcription factor 4