PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_1123_f_16

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

CPP

Protein Properties

Length: 771aa MW: 85751.9 Da PI: 7.6491

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_1123_f_16	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	47.1	4.8e-15	493	530	2	39
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 +k+CnCk+skClk+YCeCfaag +C e C+C +C+Nk Neem_1123_f_16 493 ACKRCNCKRSKCLKLYCECFAAGLYCVEPCSCLGCFNK 530 689**********************************8 PP
2	TCR	51.3	2.3e-16	578	617	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++kkgCnCk+s+ClkkYCeCf+ g+ Cs +C+Ce+CkN+ Neem_1123_f_16 578 RHKKGCNCKRSSCLKKYCECFQGGVGCSISCRCEGCKNSF 617 589***********************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	5.7E-17	492	533	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	35.895	493	618	IPR005172	CRC domain
Pfam	PF03638	4.2E-11	495	530	IPR005172	CRC domain
SMART	SM01114	1.5E-17	578	619	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	6.4E-12	580	616	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 771 aa Download sequence Send to blast
MDTPDKNRIA VSSLSKFEDS PVFNYISSLS PIEQIKSINT DNSFNSVTFT SPSSLFATPK 60 INSLRESRFL LSSNQSPDIL KPELHGKENK TSKGNSEAVQ LSEHCTEKLS MERKTRQAKG 120 IQKLFNCLNI ALKNWDFLRQ EVRRERTPVS EGMSCDVKEA SRGQEMAGAS SSLVQSDKGN 180 VADADHFEDK SNLRKICRIE QSQEVEGSDW VSLLSDAVLN SDLSIIENNP EDEDQKTVGT 240 GEISFISTVL QLPQDNANDL TDMVSVSPSC SCKQSDMIEP VTQPEEIRYL KDMDQTPDIL 300 SSNLLNKLVV SDPRAKKDNE EEKCEQSNCK QNNIRRRCLV FEMAGVHKKQ AACETNCRPL 360 IPSKTDCKDA YAEKHLLPSK TKSCSSSMVA GVGLHLNALA TTSKNSKVVK CETLASGRKL 420 ISMRSSLSSS LSLTSCQSLL NKSSTVKSEE RDPVPAGNEV KVMFNQKFFS LWFKVNSLII 480 FRCKPEHNGE SKACKRCNCK RSKCLKLYCE CFAAGLYCVE PCSCLGCFNK PIYEDKVLET 540 RRQIEFRNPL AFAPKVIRGT DSAVEIGDET NKTPASARHK KGCNCKRSSC LKKYCECFQG 600 GVGCSISCRC EGCKNSFGRK DGAEESEYEG EEAEACEKNE LDANISDNVV KEGEEEHPDL 660 LLPSSDIPRA KRSGSSLLLV NPPPKLCISL QTSQFNQPNF EEHFLQSTPE NETTKILKNS 720 FSQSSMIPAS PNSKRVSSPY HEIGSSTRYR SRRFLLRSSL SFPSVTPPRE Q

Sequence ? help Back to Top

Protein Sequence Length: 771 aa Download sequence Send to blast

MDTPDKNRIA VSSLSKFEDS PVFNYISSLS PIEQIKSINT DNSFNSVTFT SPSSLFATPK  60
INSLRESRFL LSSNQSPDIL KPELHGKENK TSKGNSEAVQ LSEHCTEKLS MERKTRQAKG  120
IQKLFNCLNI ALKNWDFLRQ EVRRERTPVS EGMSCDVKEA SRGQEMAGAS SSLVQSDKGN  180
VADADHFEDK SNLRKICRIE QSQEVEGSDW VSLLSDAVLN SDLSIIENNP EDEDQKTVGT  240
GEISFISTVL QLPQDNANDL TDMVSVSPSC SCKQSDMIEP VTQPEEIRYL KDMDQTPDIL  300
SSNLLNKLVV SDPRAKKDNE EEKCEQSNCK QNNIRRRCLV FEMAGVHKKQ AACETNCRPL  360
IPSKTDCKDA YAEKHLLPSK TKSCSSSMVA GVGLHLNALA TTSKNSKVVK CETLASGRKL  420
ISMRSSLSSS LSLTSCQSLL NKSSTVKSEE RDPVPAGNEV KVMFNQKFFS LWFKVNSLII  480
FRCKPEHNGE SKACKRCNCK RSKCLKLYCE CFAAGLYCVE PCSCLGCFNK PIYEDKVLET  540
RRQIEFRNPL AFAPKVIRGT DSAVEIGDET NKTPASARHK KGCNCKRSSC LKKYCECFQG  600
GVGCSISCRC EGCKNSFGRK DGAEESEYEG EEAEACEKNE LDANISDNVV KEGEEEHPDL  660
LLPSSDIPRA KRSGSSLLLV NPPPKLCISL QTSQFNQPNF EEHFLQSTPE NETTKILKNS  720
FSQSSMIPAS PNSKRVSSPY HEIGSSTRYR SRRFLLRSSL SFPSVTPPRE Q

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	2e-16	495	615	12	120	Protein lin-54 homolog
5fd3_B	2e-16	495	615	12	120	Protein lin-54 homolog
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006471928.1	0.0	CRC domain-containing protein TSO1 isoform X2
TrEMBL	A0A067DFH0	0.0	A0A067DFH0_CITSI; Uncharacterized protein
STRING	XP_006471926.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17096	5	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	9e-84	Tesmin/TSO1-like CXC domain-containing protein