PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_11290_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

M-type_MADS

Protein Properties

Length: 217aa MW: 24948 Da PI: 10.2907

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_11290_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	51.1	1.7e-16	10	51	2	43
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 +i + r tf kR+ ++KK +E S+LCd+ev++ii++++ Neem_11290_f_2 10 PIRHDKARLATFKKRKGSLMKKVHEFSTLCDVEVCIIIYGPK 51 5777889999******************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	14.101	1	51	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.6E-8	1	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.2E-7	3	23	IPR002100	Transcription factor, MADS-box
CDD	cd00266	9.78E-16	7	50	No hit	No description
SuperFamily	SSF55455	4.84E-17	7	80	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.7E-17	11	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.2E-7	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.2E-7	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MDSQPHKLEP IRHDKARLAT FKKRKGSLMK KVHEFSTLCD VEVCIIIYGP KLKNLPVKAE 60 TWASREGKLI DIIRKYKKAA TTADDVQRRS TLSLSKVGKN KTPQVEDDDA TRLRKKKCVA 120 KYTTWDQRMD NFTEDQLKMV IDTMDHKLKL VDKKLNMFRG GRKVMKKAAS LKLLDHDYSH 180 LDADTHQKHD AKPLNLELTI GLLPHHQVSP ELPSDLS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006430718.1	6e-71	agamous-like MADS-box protein AGL82
Refseq	XP_024037550.1	6e-71	agamous-like MADS-box protein AGL82
TrEMBL	V4S8X5	1e-69	V4S8X5_9ROSI; Uncharacterized protein
STRING	XP_006482193.1	2e-70	(Citrus sinensis)
STRING	XP_006430718.1	2e-70	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM21055	3	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58890.1	2e-25	AGAMOUS-like 82