PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_11306_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ERF
Protein Properties Length: 300aa    MW: 33385.4 Da    PI: 7.9595
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_11306_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.88.6e-21130180255
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp   + k  r++lg+f+ta eAaka+++a+ +l+g
  Neem_11306_f_1 130 HYRGVRRRP-WGKYAAEIRDP---NrKGSRVWLGTFDTAIEAAKAYDNAAFRLRG 180
                     8********.**********9...6566*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.76E-31129188No hitNo description
Gene3DG3DSA:3.30.730.102.1E-32129189IPR001471AP2/ERF domain
PfamPF008472.6E-14130180IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-23130190IPR016177DNA-binding domain
SMARTSM003809.4E-38130194IPR001471AP2/ERF domain
PROSITE profilePS5103224.5130188IPR001471AP2/ERF domain
PRINTSPR003672.1E-10131142IPR001471AP2/ERF domain
PRINTSPR003672.1E-10154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MASLQEASTL ELISQFLLTD STSMDYFSNQ YTPQTNATNT TSFNRINPDH IDVLDYYKET  60
LFSNTDQSHI PNCNKPRNHN ANQQKIPSTL SQRKPCINVT IPPTKCLNLS PNANPVAVGD  120
KEGDAVKEKH YRGVRRRPWG KYAAEIRDPN RKGSRVWLGT FDTAIEAAKA YDNAAFRLRG  180
SKAILNFPLE VGDLKSTNSE ELPVDCGKKR KLEQTETVER KVVKNEPSDE TETVERKVVK  240
KEPSDETEKA TDAVTSGGVG PLTPSSWTGF WDDGKGIFSV PPLSPLSPHP PMGYSRLTVM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-30129191163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-30127191266ATERF1
3gcc_A3e-30127191266ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00556DAPTransfer from AT5G51190Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021687038.11e-84ethylene-responsive transcription factor ERF105-like
TrEMBLA0A2I4FVZ82e-75A0A2I4FVZ8_JUGRE; ethylene-responsive transcription factor ERF105-like
STRINGXP_006490016.13e-75(Citrus sinensis)
STRINGXP_006421524.17e-76(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78932641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.13e-54ERF family protein