PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_11306_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ERF
Protein Properties Length: 223aa    MW: 24374 Da    PI: 4.3676
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_11306_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.46.5e-12991351755
             AP2  17 AeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     AeIrdp   + k  r++lg+f ta eAa+a+++a+ kl+g
  Neem_11306_f_2  99 AEIRDP---NrKGIRVWLGTFETAIEAARAYDHAAFKLRG 135
                     9****9...6566*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.83283143IPR001471AP2/ERF domain
SMARTSM003801.2E-1994149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-2198144IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-1598145IPR016177DNA-binding domain
CDDcd000189.81E-2198143No hitNo description
PfamPF008471.5E-599135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MATPEEASTL ELISQFLLTD FASMDNFISS LNLYTSHNTN FDKATADISV SDYLNEPELN  60
QTDQSSSQSK SLSTLSTIPA AADFDLSSNV NPVKGLDAAE IRDPNRKGIR VWLGTFETAI  120
EAARAYDHAA FKLRGRKAIL NFPLEVGNSN SAESESQVNF GKRRKYEEAD TVERKAVKEA  180
PEETVTETVT PAGVGQLTPS SWTGFWDDVK GMFTVPPLSP ILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-18981461563ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021286001.12e-56ethylene-responsive transcription factor ERF105-like
TrEMBLA0A2H5PTC58e-52A0A2H5PTC5_CITUN; Uncharacterized protein
TrEMBLV4S7G61e-51V4S7G6_9ROSI; Uncharacterized protein
STRINGXP_006421525.12e-52(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78932641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61600.16e-43ethylene response factor 104