PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_11339_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 175aa    MW: 19677.8 Da    PI: 4.7619
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_11339_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.67.9e-10126168145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++ ++++E+ l+ +  ++ G + W++Ia +++ gRt++++  +w 
   Neem_11339_f_1 126 KLEFSEDEETLITRMYNLVGER-WSLIAGRIP-GRTAEEIEKYWT 168
                      678*******************.*********.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF551594.97E-305100IPR001950Translation initiation factor SUI1
Gene3DG3DSA:3.30.780.101.3E-435100IPR001950Translation initiation factor SUI1
TIGRFAMsTIGR011602.7E-486100IPR005874Eukaryotic translation initiation factor SUI1
PfamPF012531.1E-242899IPR001950Translation initiation factor SUI1
CDDcd115664.90E-4529100No hitNo description
PROSITE profilePS5029623.80731101IPR001950Translation initiation factor SUI1
PROSITE profilePS500907.189121171IPR017877Myb-like domain
SMARTSM007173.0E-8125173IPR001005SANT/Myb domain
PfamPF002492.2E-8127168IPR001005SANT/Myb domain
CDDcd001672.14E-8128167No hitNo description
SuperFamilySSF466894.65E-8128171IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-12128169IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006413Biological Processtranslational initiation
GO:0003677Molecular FunctionDNA binding
GO:0003743Molecular Functiontranslation initiation factor activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MSEFDTQIPS AFDPFAEANA EDSGAGAKDY VHIRVQQRNG RKSLTTVQGL KKEFSYNKIL  60
KDLKKEFCCN GTVVQDPELG QVIQLQGDQR KNVSTFLVQV TKQYGIGPFS GDNSADPFDQ  120
SSQDSKLEFS EDEETLITRM YNLVGERWSL IAGRIPGRTA EEIEKYWTSR YSTSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ogh_A6e-321198893Eukaryotic translation initiation factor eIF-1
2rvh_A6e-321198893Eukaryotic translation initiation factor eIF-1
3j80_j6e-321198893eIF1
3j81_m6e-321198893eIF1
3jam_j6e-321198893eIF1
3jap_m6e-321198893eIF1
3jaq_m6e-321198893eIF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably involved in translation.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2237588e-74CU223758.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447521.13e-67protein translation factor SUI1 homolog
RefseqXP_006469705.13e-67protein translation factor SUI1 homolog
SwissprotO486502e-64SUI1_SALBA; Protein translation factor SUI1 homolog
TrEMBLA0A498HG611e-96A0A498HG61_MALDO; Uncharacterized protein
STRINGPGSC0003DMT4000618645e-83(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46410.15e-18MYB_related family protein