PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_11510_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

YABBY

Protein Properties

Length: 169aa MW: 18937.9 Da PI: 9.2225

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_11510_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	43.1	1.6e-13	34	73	22	61
YABBY 22 lavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaes 61 + vsvP +s+f++vtvrCGhC++llsv++ + q++++++ Neem_11510_f_1 34 VYVSVPCSSMFNIVTVRCGHCANLLSVSMGSSLQTIPVQD 73 359*****************************99999987 PP
2	YABBY	122.6	5.9e-38	94	148	116	170
YABBY 116 irPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + PekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Neem_11510_f_1 94 NAAPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 148 668**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	9.3E-14	34	73	IPR006780	YABBY protein
Pfam	PF04690	2.8E-36	92	148	IPR006780	YABBY protein
SuperFamily	SSF47095	4.97E-8	95	141	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.8E-5	96	142	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MKPDLGTKVV GFVDGVYCYK FKCTTIWVET YVSVYVSVPC SSMFNIVTVR CGHCANLLSV 60 SMGSSLQTIP VQDPQLCLLP LKLTYLGFST VINNAAPEKR QRVPSAYNRF IKEEIQRIKA 120 SNPDISHREA FSTAAKNWAH FPHIHFGLKV DGNKQAKLDQ TFAEGTQKY

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021279063.1	2e-68	putative axial regulator YABBY 2
Swissprot	Q8GW46	2e-50	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A061GUT1	6e-67	A0A061GUT1_THECC; Plant-specific transcription factor YABBY family protein isoform 1
STRING	EOY33226	9e-68	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5581	27	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	7e-48	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]