PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_1168_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB
Protein Properties Length: 236aa    MW: 27417.1 Da    PI: 8.3481
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_1168_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.4e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l++++k++G  +W+  ++  g+ R++k+c++rw++yl
    Neem_1168_f_1 14 KGAWTAEEDQKLINYIKRYGIWNWTEMPKPAGLLRSGKSCRLRWLNYL 61
                     79******************99**********99************97 PP
2Myb_DNA-binding574.4e-1867110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++++eEde++++++++lG++ W +Ia++++ +Rt++++k++w++
    Neem_1168_f_1  67 RGNFSPEEDEIIIKLHEKLGNR-WCKIAARLP-RRTDNEIKNHWHT 110
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.572961IPR017930Myb domain
SuperFamilySSF466891.07E-2911108IPR009057Homeodomain-like
SMARTSM007179.7E-111363IPR001005SANT/Myb domain
PfamPF002491.8E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-231568IPR009057Homeodomain-like
CDDcd001672.86E-91661No hitNo description
PROSITE profilePS5129428.49562116IPR017930Myb domain
SMARTSM007174.5E-1866114IPR001005SANT/Myb domain
PfamPF002492.4E-1667110IPR001005SANT/Myb domain
CDDcd001672.55E-1369112No hitNo description
Gene3DG3DSA:1.10.10.605.4E-2769117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MAKSSVCGKT SLRKGAWTAE EDQKLINYIK RYGIWNWTEM PKPAGLLRSG KSCRLRWLNY  60
LRPDIKRGNF SPEEDEIIIK LHEKLGNRWC KIAARLPRRT DNEIKNHWHT RLKKRLKNNL  120
APSRSVSRRR ENAVAEPNNN DPPNVDPLFP NSLKALNMND CNSPSSPYPD HEVNQIQMIE  180
ANNHSYEGFE RLSESLYMDD YYGVAFVCPE FMVVTSQMEL LEDTCGYYDG GFDLWA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-2981161108B-MYB
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9SJX81e-53MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A2N9IFE61e-63A0A2N9IFE6_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.13e-55myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]