PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_11719_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 164aa    MW: 19247 Da    PI: 8.8213
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_11719_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM67.53.6e-21121318128
             NAM   8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101
                     +Ptdeelv +yL  kv +   ++ + ik++++y++eP +Lp  ++k+++ ++yfF++ +   ++g    r+++ gyW++  +   +++++g+ v 
  Neem_11719_f_1  12 DPTDEELVFHYLIGKVLDGL-DF-DYIKNLELYDHEPAELPsIACKTGHYKMYFFTRIRY-LNNGGIVDRKARGGYWSTVWEPFYIHDRDGNSVA 103
                     7**************99876.55.78***************5577777789999998766.56788999999*********************** PP

             NAM 102 lkktLvfy.kgrapkgektdWvmheyrl 128
                      k++ v+y k +a++++kt W  +ey l
  Neem_11719_f_1 104 KKTSPVYYmKDQASEPVKTGWRPKEYML 131
                     ********5569999***********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.3775155IPR003441NAC domain
PfamPF023652.1E-1012130IPR003441NAC domain
SuperFamilySSF1019412.35E-2312143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MRKFHSMVTI LDPTDEELVF HYLIGKVLDG LDFDYIKNLE LYDHEPAELP SIACKTGHYK  60
MYFFTRIRYL NNGGIVDRKA RGGYWSTVWE PFYIHDRDGN SVAKKTSPVY YMKDQASEPV  120
KTGWRPKEYM LLQSHLPNQS DKLSEMLTLS VVYLRPQGRS SARW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006484725.18e-32uncharacterized protein LOC102615249 isoform X1
RefseqXP_024957056.15e-32uncharacterized protein LOC102615249 isoform X2
TrEMBLA0A2H5NSS82e-30A0A2H5NSS8_CITUN; Uncharacterized protein
STRINGXP_006484725.13e-31(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.11e-12NAC domain containing protein 94