PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_11793_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

TCP

Protein Properties

Length: 195aa MW: 21157.8 Da PI: 5.6565

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_11793_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	119.3	4.8e-37	89	161	1	73
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 +a+k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++ Neem_11793_f_1 89 PAPKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAM 161 589**************************************************************88887433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.6E-30	95	168	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.141	96	150	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MDNVQKQEIE EDEDARTTVD LRINCAENAE LENNYYTKVD PTSNSPTTPP VAPKEEPETE 60 ERSAQSLGIM PLAVHVPAAI PLPLSAAPPA PKRASTKDRH TKVEGRGRRI RMPATCAARI 120 FQLTRELGHK SDGETIRWLL EHAEPAIIAA TGTGTVPAIA MSVNGTLKIP TTTNASSEPG 180 DQHFGLVWLG TNKFC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021904289.1	4e-90	transcription factor TCP9
Swissprot	O64647	3e-56	TCP9_ARATH; Transcription factor TCP9
TrEMBL	A0A2C9WRV6	1e-83	A0A2C9WRV6_MANES; Uncharacterized protein
STRING	evm.model.supercontig_18.176	2e-89	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9831	24	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	3e-53	TCP family protein