PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_1184_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

GRAS

Protein Properties

Length: 446aa MW: 50499.4 Da PI: 6.5922

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_1184_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	405.7	4.6e-124	49	445	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaal.............. 81 +++lL++cAe v+++d+++a++l++ ls+++sp+gd+++Rl++ f +AL+ rl+r+ + + + + s++s++ ++++ +al Neem_1184_f_2 49 MRQLLISCAELVAQSDFAAAHRLISILSTNSSPYGDSIERLVHQFIRALSLRLNRQHANASLLMmNISNASTSITTTTNTALttaatanfisndss 144 589**************************************************66554433323333332222222222245566778888888 PP GRAS 82 ....kl..fsevsPilkfshltaNqaIleave.geervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLa 166 ++ +++++P+l+fshltaNqaIle++e g++++Hi+Dfdi++G+QWp+L+qaLa+R+ ++pp+lRiTg g + e+l++tg+rL Neem_1184_f_2 145 slqtCYlsLNQITPFLRFSHLTANQAILESIEvGQQAIHILDFDIMHGVQWPPLMQALAERSnnslQPPPMLRITGTGC----DLEMLRRTGDRLL 236 88662257*******************95569**********************877778*******....9******** PP GRAS 167 kfAeelgvpfefnvlvak....rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfl 258 fA++lg++f+f++l+ + + + +++L + p+E+laVn++l lhrll++++ +L+ +k l+Pkv++++e+ea+hn++ Fl+rf+ Neem_1184_f_2 237 MFAQTLGLRFQFHPLLLDddptSAALYLPSALTLLPNETLAVNCMLYLHRLLRDDTRDLR---LFLHKIKALNPKVMTIAEREANHNHPLFLQRFV 329 ***********554232144555799******************77666555...9**************************** PP GRAS 259 ealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrvee 353 ea+++y+a+fdslea+lp++s+er vE+ ++greiv++va+eg++rrerhe++e+W++ l+++GF+++pls + +qaklllr ++ s+gy+++ Neem_1184_f_2 330 EAVDHYTAIFDSLEATLPPNSRERLAVEQIWFGREIVEIVAAEGDNRRERHERYESWEMILRSSGFSNLPLSAYSLSQAKLLLRLHYpSEGYQLQI 425 ******************************************************************************************** PP GRAS 354 esgslvlgWkdrpLvsvSaW 373 ++s++lgW++r+L+svS+W Neem_1184_f_2 426 LNNSFFLGWQNRALFSVSSW 445 ****************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	60.296	23	425	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.6E-121	49	445	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010223	Biological Process	secondary shoot formation

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence Send to blast
MLGSLNTSSS HDQEEEEDPS TSDLKYQQIT HPHPSHSRAG LMNFTAIHMR QLLISCAELV 60 AQSDFAAAHR LISILSTNSS PYGDSIERLV HQFIRALSLR LNRQHANASL LMMNISNAST 120 SITTTTNTAL TTAATANFIS NDSSSLQTCY LSLNQITPFL RFSHLTANQA ILESIEVGQQ 180 AIHILDFDIM HGVQWPPLMQ ALAERSNNSL QPPPMLRITG TGCDLEMLRR TGDRLLMFAQ 240 TLGLRFQFHP LLLDDDPTSA ALYLPSALTL LPNETLAVNC MLYLHRLLRD DTRDLRLFLH 300 KIKALNPKVM TIAEREANHN HPLFLQRFVE AVDHYTAIFD SLEATLPPNS RERLAVEQIW 360 FGREIVEIVA AEGDNRRERH ERYESWEMIL RSSGFSNLPL SAYSLSQAKL LLRLHYPSEG 420 YQLQILNNSF FLGWQNRALF SVSSWH

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence Send to blast

MLGSLNTSSS HDQEEEEDPS TSDLKYQQIT HPHPSHSRAG LMNFTAIHMR QLLISCAELV  60
AQSDFAAAHR LISILSTNSS PYGDSIERLV HQFIRALSLR LNRQHANASL LMMNISNAST  120
SITTTTNTAL TTAATANFIS NDSSSLQTCY LSLNQITPFL RFSHLTANQA ILESIEVGQQ  180
AIHILDFDIM HGVQWPPLMQ ALAERSNNSL QPPPMLRITG TGCDLEMLRR TGDRLLMFAQ  240
TLGLRFQFHP LLLDDDPTSA ALYLPSALTL LPNETLAVNC MLYLHRLLRD DTRDLRLFLH  300
KIKALNPKVM TIAEREANHN HPLFLQRFVE AVDHYTAIFD SLEATLPPNS RERLAVEQIW  360
FGREIVEIVA AEGDNRRERH ERYESWEMIL RSSGFSNLPL SAYSLSQAKL LLRLHYPSEG  420
YQLQILNNSF FLGWQNRALF SVSSWH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	4e-60	54	445	23	377	Protein SCARECROW
5b3h_D	4e-60	54	445	23	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269\|PubMed:12730136}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006475101.1	0.0	scarecrow-like protein 18
Swissprot	Q9ZWC5	1e-142	SCL18_ARATH; Scarecrow-like protein 18
TrEMBL	V5NBF3	0.0	V5NBF3_9ROSI; Lateral
STRING	XP_006475101.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11329	27	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	1e-135	GRAS family protein

Publications ? help Back to Top
Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]