PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_11875_f_4

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

LBD

Protein Properties

Length: 156aa MW: 17381.4 Da PI: 7.7922

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_11875_f_4	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	116.6	1.6e-36	16	105	11	100
DUF260 11 kCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a+la++++e Neem_11875_f_4 16 ICVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAE 105 6*************************************************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.638	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.1E-36	16	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MDIHKLMTSS SGLGDICVEK CVLAPYFPPT EPYKFTIAHR VFGASNIIKF LQELPESQRA 60 DAVSSMVYEA NARIRDPVYG CAGAICHLQK QVSELQAQLA KAQAELVTMQ CQQRNLIAVI 120 CMEMAQAQAP AAFWLKLGGS LDMMKEEKLI ELRKKF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-36	17	113	22	118	LOB family transfactor Ramosa2.1
5ly0_B	3e-36	17	113	22	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC144484	3e-38	AC144484.5 Medicago truncatula clone mth2-30o16, complete sequence.
GenBank	AC152818	3e-38	AC152818.17 Medicago truncatula clone mth2-85g12, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006436214.2	9e-71	LOB domain-containing protein 1
Refseq	XP_006485928.1	9e-71	LOB domain-containing protein 1 isoform X2
Swissprot	Q9LQR0	6e-59	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A067E155	2e-69	A0A067E155_CITSI; Uncharacterized protein
TrEMBL	A0A2H5NZ66	2e-69	A0A2H5NZ66_CITUN; Uncharacterized protein
TrEMBL	V4VB10	6e-70	V4VB10_9ROSI; Uncharacterized protein (Fragment)
STRING	XP_006485928.1	3e-70	(Citrus sinensis)
STRING	XP_006436214.1	9e-71	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1141	28	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	1e-51	LOB domain-containing protein 1