PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_11956_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C2H2

Protein Properties

Length: 168aa MW: 18815 Da PI: 5.3032

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_11956_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.5	5.1e-05	35	57	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + Cp C+k F++ L H++ H Neem_11956_f_2 35 FICPRCSKAFPTTQALGGHQNAH 57 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.37E-7	31	62	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.4E-4	33	61	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	2.9E-8	35	59	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.572	35	62	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	37	57	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MYTINLLGGF ESADHHSSAT VENLRQFSIV DSNPFICPRC SKAFPTTQAL GGHQNAHRRE 60 RNEEQWTSWE ERRKKARELL IQKSKPPGDG RIIDFWAKDL AKTTDSSSGG PVPNEKFMGN 120 GEMGEFVGRD FLAMVAGDGG DGWLEDFPVD YRAHEITSTV ELDLTLKL

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19978	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06650.1	5e-10	C2H2 family protein