PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_1195_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

LBD

Protein Properties

Length: 198aa MW: 22842.9 Da PI: 8.1201

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_1195_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121.8	3.8e-38	12	111	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 aCa+Ck++rrkC+k+C la+yfpa+qpk+f+n+h+lFG+s + k+l++++++++++am+s+++e+++ra+ Pv+G++g+i++l++ql+ + el + Neem_1195_f_2 12 ACAVCKYQRRKCQKNCRLARYFPADQPKTFQNAHRLFGVSGIAKILNNVDDDKKDRAMASIIFESNIRAKYPVNGCLGLIFSLEKQLQAAVDELRH 107 7********************************************************************************************999 PP DUF260 97 lkee 100 ++++ Neem_1195_f_2 108 VNTQ 111 9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.641	11	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-35	12	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MTIKGEGGTK QACAVCKYQR RKCQKNCRLA RYFPADQPKT FQNAHRLFGV SGIAKILNNV 60 DDDKKDRAMA SIIFESNIRA KYPVNGCLGL IFSLEKQLQA AVDELRHVNT QLAICREQTQ 120 YQTPTSSSNP SEIRIDVNNL IEQSGNLDDH EFYVDINEDV KPFVRNIDEQ NYGFIHRIYD 180 INQKNIKAEL HMDWLQKF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-24	8	112	7	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-24	8	112	7	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006482664.2	4e-66	LOB domain-containing protein 3-like
Swissprot	Q9STS6	1e-37	LBD27_ARATH; LOB domain-containing protein 27
TrEMBL	V4SU83	8e-65	V4SU83_9ROSI; Uncharacterized protein
STRING	XP_006482664.1	5e-66	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6303	27	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	5e-40	LOB domain-containing protein 27

Publications ? help Back to Top
Kim MJ,Kim M,Kim J Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis. Plant Signal Behav, 2015. 10(8): p. e1044193 [PMID:26252070] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]