PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_1219_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

GRF

Protein Properties

Length: 529aa MW: 57865.6 Da PI: 9.6148

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_1219_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	73.5	2.3e-23	127	170	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDG kWRC+r++++++k+CErH+hrg++rsrk++e Neem_1219_f_1 127 DPEPGRCRRTDGNKWRCKRDAVPDQKYCERHMHRGSQRSRKHVE 170 79****************************************97 PP
2	WRC	63.3	3.6e-20	411	446	3	38
WRC 3 epgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsr 38 e grCrRtDGKkWRCsr v++++k+CE+H+hrg ++ Neem_1219_f_1 411 ELGRCRRTDGKKWRCSRVVVPDQKYCEKHMHRGAKK 446 679*****************************9765 PP
3	QLQ	25.8	3.3e-10	43	79	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s +T+aQ ++ +Q l++ ++ a++PvP +L +i+k Neem_1219_f_1 43 SVLTPAQYFEFQRQSLIFEHMKAGLPVPLHLWSPIWK 79 579********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51666	14.558	44	79	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	4.9E-6	45	78	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.12	127	171	IPR014977	WRC domain
Pfam	PF08879	3.3E-19	128	170	IPR014977	WRC domain
PROSITE profile	PS51667	20.906	409	455	IPR014977	WRC domain
Pfam	PF08879	4.6E-18	412	447	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence Send to blast
MRGEEEPRVV TEGKKIILNE ESPLIKVDFG NCAQNLLDKN GNSVLTPAQY FEFQRQSLIF 60 EHMKAGLPVP LHLWSPIWKK VASSDRGGIY KQYSSFVGSG PPNVDDRKKC RRTDGNNWKV 120 DQRYMMDPEP GRCRRTDGNK WRCKRDAVPD QKYCERHMHR GSQRSRKHVE LFQIANPWDT 180 TSPKDLENLK TISTHSQNNP LPQSPLPLTF LPPSDSKNSK TNPTLSQLIN PSSSNTSNIP 240 NSKDGNKIDS TFLGERKGYT LVGDGINSSI TTNAANNATL AVTISTPIMP NTAANNSNND 300 VIDFVNSATG PISSSNPTTH SIPGSGCSFT TTNTHTANIN NKNNNNEGIG QKREGGSFSS 360 LKNMIIGSST SGNNAIVGNS VSTGFRFSPK SVLQVLGCRG SCSYRSDIEL ELGRCRRTDG 420 KKWRCSRVVV PDQKYCEKHM HRGAKKRLEV LHPVANLTTV PASPCTPCTM STTRKADSAA 480 TSTSTNLSMS IPTGPQFLTN DVKSPSSCSS DATINDTAIT TNENSNFSS

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence Send to blast

MRGEEEPRVV TEGKKIILNE ESPLIKVDFG NCAQNLLDKN GNSVLTPAQY FEFQRQSLIF  60
EHMKAGLPVP LHLWSPIWKK VASSDRGGIY KQYSSFVGSG PPNVDDRKKC RRTDGNNWKV  120
DQRYMMDPEP GRCRRTDGNK WRCKRDAVPD QKYCERHMHR GSQRSRKHVE LFQIANPWDT  180
TSPKDLENLK TISTHSQNNP LPQSPLPLTF LPPSDSKNSK TNPTLSQLIN PSSSNTSNIP  240
NSKDGNKIDS TFLGERKGYT LVGDGINSSI TTNAANNATL AVTISTPIMP NTAANNSNND  300
VIDFVNSATG PISSSNPTTH SIPGSGCSFT TTNTHTANIN NKNNNNEGIG QKREGGSFSS  360
LKNMIIGSST SGNNAIVGNS VSTGFRFSPK SVLQVLGCRG SCSYRSDIEL ELGRCRRTDG  420
KKWRCSRVVV PDQKYCEKHM HRGAKKRLEV LHPVANLTTV PASPCTPCTM STTRKADSAA  480
TSTSTNLSMS IPTGPQFLTN DVKSPSSCSS DATINDTAIT TNENSNFSS

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13760	20	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	7e-24	growth-regulating factor 2