PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_12317_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family TALE
Protein Properties Length: 330aa    MW: 37608.6 Da    PI: 6.8486
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_12317_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.31.1e-072332662154
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     k +yp+++++++L +++gL+ +q+ +WF N+R +
  Neem_12317_f_1 233 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 266
                     469*****************************87 PP
2ELK25.33.5e-09187208122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK +L++++++++ ++++E++
  Neem_12317_f_1 187 ELKIELKQGFKSRIEDVREEIL 208
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.3E-192266IPR005540KNOX1
PfamPF037901.5E-172465IPR005540KNOX1
SMARTSM012561.3E-2376131IPR005541KNOX2
PfamPF037916.6E-1780130IPR005541KNOX2
PROSITE profilePS512139.132187207IPR005539ELK domain
PROSITE profilePS5007111.677207270IPR001356Homeobox domain
SMARTSM003891.3E-10209274IPR001356Homeobox domain
SuperFamilySSF466895.13E-16209273IPR009057Homeodomain-like
CDDcd000861.67E-11210271No hitNo description
Gene3DG3DSA:1.10.10.608.3E-25214271IPR009057Homeodomain-like
PfamPF059201.2E-17227266IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MQEPSLGVMG SSGGEVSGEQ SRRLKAEIAT HPLYEQLLAA HVSCLRVATP IDQLPLIDAQ  60
LSQSHHILRS YASHHHSLAP HERQELDNFL AQYLIVLCTF KEQLQQHVRV HAVEAVMACR  120
EIENTLQALT GVPLGEGTGA TMSDDEDELQ MDFSIDQSGS DSHDLMGFGP LLPTESERSL  180
MERVRQELKI ELKQGFKSRI EDVREEILRK RRAGKLPGDT TTVLKNWWQQ HSKWPYPTED  240
DKAKLVEETG LQLKQINNWF INQRKRNWHS SSQSVTSLKS KRKRDQRIDE LTSNQLMSVN  300
VPIYTDLFGR LPGVYIYTFI ANFLSVKAVR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263283RKRNWHSSSQSVTSLKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4914437e-44KC491443.1 Salix x smithiana haplotype 2 putative lignin regulation (Knat7) gene, partial cds.
GenBankKC4914447e-44KC491444.1 Salix x smithiana haplotype 3 putative lignin regulation (Knat7) gene, partial cds.
GenBankKC4914467e-44KC491446.1 Salix x smithiana haplotype 5 putative lignin regulation (Knat7) gene, partial cds.
GenBankKC4914477e-44KC491447.1 Salix x smithiana haplotype 7 putative lignin regulation (Knat7) gene, partial cds.
GenBankKC4914487e-44KC491448.1 Salix caprea haplotype 3 putative lignin regulation (Knat7) gene, partial cds.
GenBankKC4914497e-44KC491449.1 Salix viminalis haplotype 1 putative lignin regulation (Knat7) gene, partial cds.
GenBankKC4914527e-44KC491452.1 Salix viminalis haplotype 4 putative lignin regulation (Knat7) gene, partial cds.
GenBankKC4914537e-44KC491453.1 Salix cinerea haplotype 2 putative lignin regulation (Knat7) gene, partial cds.
GenBankKC4914557e-44KC491455.1 Salix cinerea haplotype 5 putative lignin regulation (Knat7) gene, partial cds.
GenBankKC4914567e-44KC491456.1 Salix cinerea haplotype 7 putative lignin regulation (Knat7) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158449.10.0hypothetical protein PHAVU_002G153300g
SwissprotQ9FPQ81e-170KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLV7CM510.0V7CM51_PHAVU; Uncharacterized protein
STRINGXP_007158449.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-159KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]