PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_12508_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bZIP

Protein Properties

Length: 130aa MW: 15007 Da PI: 10.8746

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_12508_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47.9	2.9e-15	85	127	5	47
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 +r++r++kNRe+A rsR+RK+a++ eLe+kv Le+eN++L+ Neem_12508_f_1 85 RRQKRMIKNRESAARSRARKQAYTHELENKVSRLEEENERLRR 127 79***************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	7.4E-15	79	128	No hit	No description
SMART	SM00338	6.5E-7	81	128	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.691	83	128	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.0E-13	85	127	IPR004827	Basic-leucine zipper domain
CDD	cd14707	2.42E-20	85	128	No hit	No description
SuperFamily	SSF57959	6.06E-11	85	128	No hit	No description
PROSITE pattern	PS00036	0	88	103	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 130 aa Download sequence Send to blast
MQYQLPSVQP HPQQQHQQNL MAVYMPTHSI QQSLPVSANP ILDSQYPESQ MNMSPSSLMG 60 TLSDTQTPGR KRVAPGGVAE KTVERRQKRM IKNRESAARS RARKQAYTHE LENKVSRLEE 120 ENERLRRQRV

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024955672.1	5e-68	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_024955673.1	5e-68	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	4e-39	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A067F1G5	1e-68	A0A067F1G5_CITSI; Uncharacterized protein
STRING	XP_006430421.1	8e-67	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1884	28	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	8e-33	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]