PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_1258_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 421aa MW: 48345.2 Da PI: 4.6236

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_1258_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.5	3.8e-11	235	287	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +++ hn+ E+ RR ++N ++ L llP + ++k+ s + i +A eYI +Lq Neem_1258_f_2 235 KKEEHNAKEKVRRMKLNASYLALGALLPDsR---RKKRRSAVVIIDRALEYIPDLQ 287 6889***********************44...7777**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.05E-9	234	291	No hit	No description
PROSITE profile	PS50888	12.881	234	286	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.0E-8	235	287	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.28E-13	235	304	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.6E-12	235	306	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.8E-7	240	292	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MIMEEFPVQN SDHEDYSVLA TPFYSWDDLW SLPEDSNIFR ASENNRTDSA SVKTSIDERL 60 LEASDSPWNI NVLQENTIVP SCYALNSFHG QENLAQAEPD INEDLIGKGT VTYHEDNSLF 120 TTLKSCENLI PLPDESQIIF LEQENSTLEP DIDNELQENG LKYREGNSLS KCFEVVDQEM 180 QSLTAAASIN NLGKRFKGKT RERNHRINRL KSEKTPISKI AQLNEEEDEE MQISKKEEHN 240 AKEKVRRMKL NASYLALGAL LPDSRRKKRR SAVVIIDRAL EYIPDLQNET EKLTLRKNNL 300 QSTIENKKNL SQTLEVEHQA PTISVHEVRK GEVIIQICVI KNRNTVFSKL LENMEAEGMN 360 IVSASTLQVR EDRVCYNLHI QMNANSLEAD YVNILREEMN ANSLEADYVN ILREEVISWL 420 R

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MIMEEFPVQN SDHEDYSVLA TPFYSWDDLW SLPEDSNIFR ASENNRTDSA SVKTSIDERL  60
LEASDSPWNI NVLQENTIVP SCYALNSFHG QENLAQAEPD INEDLIGKGT VTYHEDNSLF  120
TTLKSCENLI PLPDESQIIF LEQENSTLEP DIDNELQENG LKYREGNSLS KCFEVVDQEM  180
QSLTAAASIN NLGKRFKGKT RERNHRINRL KSEKTPISKI AQLNEEEDEE MQISKKEEHN  240
AKEKVRRMKL NASYLALGAL LPDSRRKKRR SAVVIIDRAL EYIPDLQNET EKLTLRKNNL  300
QSTIENKKNL SQTLEVEHQA PTISVHEVRK GEVIIQICVI KNRNTVFSKL LENMEAEGMN  360
IVSASTLQVR EDRVCYNLHI QMNANSLEAD YVNILREEMN ANSLEADYVN ILREEVISWL  420
R

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10558	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71200.1	9e-36	bHLH family protein