PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_12650_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NF-YC

Protein Properties

Length: 161aa MW: 18507.5 Da PI: 9.3662

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_12650_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	58.2	1.8e-18	19	102	15	98
NF-YC 15 dfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 + ++ + +arikki++adedv +i+ +P l+ska elf+ +l r++ + + +t++ ++++v++ ++fdfl +iv + Neem_12650_f_1 19 KHARSKSLVARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYDITLKRGAKTMNSLHLKQCVQKFNVFDFLREIVSK 102 334455568***********************************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.6E-23	27	101	IPR009072	Histone-fold
Pfam	PF00808	9.6E-17	28	87	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	1.82E-19	34	104	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MQKLYYIKEV LIATELHSKH ARSKSLVARI KKIMQADEDV GKIAMAVPLL VSKALELFLQ 60 DLCDRTYDIT LKRGAKTMNS LHLKQCVQKF NVFDFLREIV SKVPDLGGSD TAGEERSVAK 120 RRKIDDEDTD DESKRSRMVS IYDFLNIVLS WKVDHSSLRY V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	6e-20	28	88	15	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010031686.1	1e-65	PREDICTED: dr1-associated corepressor
Swissprot	A0JPP1	7e-26	NC2A_RAT; Dr1-associated corepressor
Swissprot	Q14919	8e-26	NC2A_HUMAN; Dr1-associated corepressor
Swissprot	Q2YDP3	8e-26	NC2A_BOVIN; Dr1-associated corepressor
TrEMBL	A0A059ABE2	4e-60	A0A059ABE2_EUCGR; Uncharacterized protein
STRING	XP_010031686.1	5e-65	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13968	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-52	nuclear factor Y, subunit C11