PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_12802_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NF-YB

Protein Properties

Length: 146aa MW: 16369.5 Da PI: 7.4178

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_12802_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	42.4	1.7e-13	36	104	26	94
NF-YB 26 kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 + kda e + fi ++++ a+d c++ kr+tin++d+l al ++ f + + pl++ l++yr+ + Neem_12802_f_2 36 SVHKDALLAFSESARIFIHYLSATANDICKEAKRQTINAEDVLKALEEIDFPELIGPLRASLNEYRQKN 104 56789999999*******************************************************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	9.0E-31	12	141	IPR009072	Histone-fold
Pfam	PF00808	5.4E-10	13	81	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	4.19E-23	16	120	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MDTEKVVPEV EELQKTIVRR VVKDKLQECS PDVDISVHKD ALLAFSESAR IFIHYLSATA 60 NDICKEAKRQ TINAEDVLKA LEEIDFPELI GPLRASLNEY RQKNAGKRAG ASKSKEEKKK 120 QKVEGEPSKK SGGKTKKDKG NEDTEE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006424230.1	1e-70	DNA polymerase epsilon subunit 3
TrEMBL	A0A1Q3CYN3	2e-69	A0A1Q3CYN3_CEPFO; CBFD_NFYB_HMF domain-containing protein
STRING	XP_006424230.1	4e-70	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12007	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	3e-45	nuclear factor Y, subunit B11