PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_13613_f_4

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

MYB_related

Protein Properties

Length: 190aa MW: 21670.6 Da PI: 8.7109

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_13613_f_4	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.8	6.6e-10	48	77	1	30
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 +g+WT+eEd++lv ++++G g+W++ ++ Neem_13613_f_4 48 KGPWTPEEDQILVSFIQRYGHGNWRALPKQ 77 79***********************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-13	39	79	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.76	43	90	IPR017930	Myb domain
SuperFamily	SSF46689	1.52E-9	44	80	IPR009057	Homeodomain-like
Pfam	PF00249	4.0E-8	48	77	IPR001005	SANT/Myb domain
CDD	cd00167	5.51E-6	50	76	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MKDRKSLPPV LKKAREGERE ILLRNKRISE IGRTMARAPC CQRMGLKKGP WTPEEDQILV 60 SFIQRYGHGN WRALPKQAEF DDHALLRRDI ENATKISEPA ENLMFTTHQR IQNPEAMLVS 120 RPQSRLELVG SAFNESANTS GNATPGDDGK NETRNFVTKE TMNYDTSNVM EFWYNILMEA 180 AGTEMQKSLG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006442693.1	5e-32	transcription factor MYB4
TrEMBL	V4T6P0	1e-30	V4T6P0_9ROSI; Uncharacterized protein
STRING	XP_006442693.1	2e-31	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22791	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	2e-23	myb domain protein 15