PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_1375_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NAC

Protein Properties

Length: 201aa MW: 24493.5 Da PI: 5.598

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_1375_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	89.4	6.2e-28	9	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +p GfrF+Ptd+el+ e L +kv+g+++++ + i ++d+y+++P +++ ++++ +++e ++++ +++ + + + g W+atg+ k+++ Neem_1375_f_2 9 MPTGFRFNPTDDELI-ELLDRKVSGQDMHFYGHfILQTDVYNLDPDNFQwdQNLALSNNERFYYCVKENDS------REVSGCGWWRATGHVKKIY 97 699**********.99*****9998877**********8644666788999998753......347789********* PP NAM 94 sk..kgelvglkktLvfy........kgrapkgektdWvmheyrl 128 ++ ++ lvg kk L+f+ + r++++ kt+W+mheyr+ Neem_1375_f_2 98 VNynNQVLVGFKKPLTFHkfrdyqdvETRRRNTIKTNWIMHEYRI 142 99767777******777777766899999********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.2E-31	2	157	IPR003441	NAC domain
PROSITE profile	PS51005	32.686	9	157	IPR003441	NAC domain
Pfam	PF02365	5.7E-17	10	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MLMMEMLMMP TGFRFNPTDD ELIELLDRKV SGQDMHFYGH FILQTDVYNL DPDNFQWDQN 60 LALSNNERFY YCVKENDSRE VSGCGWWRAT GHVKKIYVNY NNQVLVGFKK PLTFHKFRDY 120 QDVETRRRNT IKTNWIMHEY RIESYSTEWR LCRLKHKGKR SVQEEMEADF SYPCYDHFED 180 DQLQQYADSP EQLFPSIWSW Q

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-16	4	164	12	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-16	4	164	12	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-16	4	164	12	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-16	4	164	12	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-16	4	164	15	174	NAC domain-containing protein 19
3swm_B	1e-16	4	164	15	174	NAC domain-containing protein 19
3swm_C	1e-16	4	164	15	174	NAC domain-containing protein 19
3swm_D	1e-16	4	164	15	174	NAC domain-containing protein 19
3swp_A	1e-16	4	164	15	174	NAC domain-containing protein 19
3swp_B	1e-16	4	164	15	174	NAC domain-containing protein 19
3swp_C	1e-16	4	164	15	174	NAC domain-containing protein 19
3swp_D	1e-16	4	164	15	174	NAC domain-containing protein 19
4dul_A	1e-16	4	164	12	171	NAC domain-containing protein 19
4dul_B	1e-16	4	164	12	171	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024950105.1	4e-81	NAC domain-containing protein 83-like
TrEMBL	B9HH64	4e-65	B9HH64_POPTR; Uncharacterized protein
STRING	XP_006495018.1	2e-78	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16224	6	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	5e-21	NAC domain containing protein 58