PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_13837_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NAC

Protein Properties

Length: 123aa MW: 13559.2 Da PI: 4.5084

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_13837_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	28.8	3.5e-09	64	119	1	49
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpk 49 lp+G++F+Ptd+e++ e+L++kv +++ ++ e +++ +i++++P++Lp Neem_13837_f_1 64 LPAGVKFDPTDNEIL-EHLEAKVLSDSrklhplID--EfipTLEGEnGICYTHPEKLPG 119 799*********9.999999956644322..22222333336*******93 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.4E-9	58	120	IPR003441	NAC domain
PROSITE profile	PS51005	11.584	64	123	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 123 aa Download sequence Send to blast
MTWCNNSDDE EVAAAIRITT TSAEEQHCVT AAKTTQEIRT ITCPSCGHTI QFQDQTGIHD 60 LPGLPAGVKF DPTDNEILEH LEAKVLSDSR KLHPLIDEFI PTLEGENGIC YTHPEKLPGF 120 VSK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018811298.1	1e-60	PREDICTED: NAC domain-containing protein 73-like
Refseq	XP_018811299.1	1e-60	PREDICTED: NAC domain-containing protein 73-like
Refseq	XP_018854823.1	1e-61	PREDICTED: NAC domain-containing protein 73-like
Swissprot	O49459	3e-45	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A2I4DVX6	2e-59	A0A2I4DVX6_JUGRE; NAC domain-containing protein 73-like
TrEMBL	A0A2I4HF95	2e-60	A0A2I4HF95_JUGRE; NAC domain-containing protein 73-like
STRING	XP_008225157.1	2e-55	(Prunus mume)
STRING	XP_006467723.1	1e-55	(Citrus sinensis)
STRING	VIT_10s0003g00350.t01	2e-55	(Vitis vinifera)
STRING	EMJ12843	2e-55	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM21083	5	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-47	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]