PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_1386_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 333aa    MW: 36483.6 Da    PI: 8.469
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_1386_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.72.4e-12555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+e l  +v+++G+g Wk I r          R+  ++k++w++
    Neem_1386_f_2  5 KQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEfnpflFSRSNIDLKDKWRN 55
                     79*****************************9*9**989**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.378161IPR017930Myb domain
SuperFamilySSF466894.02E-16258IPR009057Homeodomain-like
SMARTSM007175.2E-9459IPR001005SANT/Myb domain
PfamPF002493.9E-9555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-14556IPR009057Homeodomain-like
CDDcd116602.26E-21656No hitNo description
Gene3DG3DSA:1.10.10.102.9E-6125157IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150414.705126239IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467852.34E-6127159IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005382.7E-5128157IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGNPKQKWTA EEEEALRAGV AKHGTGKWKN IQRDPEFNPF LFSRSNIDLK DKWRNMSVSA  60
GGNGPREKSR TPKPKGGSDA PAVPLSTPQT SALPAAVAND ASTDPIVDDS ARSSAPNDFV  120
IFKISQSPRY NELIFEALAA LKEPNGSDVS AILNYIELMG CVWEVNILSE LCHCRVSFQQ  180
RLEVPQNFRR LLSSRLRSMI ALLIYAEVTI SSKLQLLIAA KQDKQGRSPK VQNCFKIKED  240
SSFGTKTPIP KQKDVRPKPL LNTNSIINGD TVEAAAAAAA GQIADAENKS FVAAEAVKEA  300
ERISRMAEDT DSLLQLAKEI FERCSQGEIV LMA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006451517.11e-132single myb histone 4
RefseqXP_006475491.11e-132single myb histone 4-like
TrEMBLA0A067EH621e-132A0A067EH62_CITSI; Uncharacterized protein
STRINGXP_006475491.11e-132(Citrus sinensis)
STRINGXP_006451517.11e-132(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23212875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.17e-56MYB_related family protein