PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_1389_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GRAS
Protein Properties Length: 549aa    MW: 61352.7 Da    PI: 6.1479
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_1389_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3043.7e-931865483374
           GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                    e ++++A++++s++l+laq +Larl+++ +sp+g+p+ R+a+yf+eAL++ l++       + p+   s+++  +++ a+k+fs +sPi+ f+h+t
  Neem_1389_f_1 186 EEIIRAADCFDSNELQLAQMILARLNQRiRSPAGKPLLRAAFYFKEALNSLLNG------LTSPTHLPSWSEIFQSVRAYKAFSGISPIPMFTHFT 275
                    6789***********************99*************************......34466666677799********************** PP

           GRAS  98 aNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpeg......ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                    + qa+le+++g+ + +HiiDfdi+ G+Q++++++++a+++++      p slRiT+++++e    +e++ ++e+L +fA+el+++f++++++++++
  Neem_1389_f_1 276 TTQALLESLDGSpTLIHIIDFDIGFGGQYASFMREIAEKAQScnklmnPTSLRITAIVPEE--YVTETKLIKENLIHFAQELRIRFHIEFVLVRSF 369
                    ************8889***********************94444555489*********66..99999**************************** PP

           GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklpres 279
                    e+l++++ ++  gE++aV l+  ++r l ++ +       ++  +++lsP vvv+v++e  +++  ++ F + f+++leyy+++f+sl+a +  ++
  Neem_1389_f_1 370 EMLSFKAVKFMDGEKIAVVLSPTIFRRLGSTNNAVG----FVTNLRRLSPSVVVFVDNEgwTECgATPLFRRNFVNSLEYYTMVFESLDAAV-GDA 460
                    ****************************66666666....*******************76677556679999*****************97.678 PP

           GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    e+++k+E  ll+++i+ +v  +g++       ++ Wre ++ aG++p++ls++a  qa++ll+k ++ g++v +++ +lvl+W++ +Lv++SaWr
  Neem_1389_f_1 461 EWARKIEMYLLKPRIKAAVEVAGRR-------VAPWREVFSGAGMRPMQLSQFADYQAECLLAKLQVGGFHVAKQQTELVLCWHQWALVATSAWR 548
                    999********************98.......89************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.185158528IPR005202Transcription factor GRAS
PfamPF035141.3E-90186548IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MRVPPKSPQN SQSHNPKPVS NSNNSNVSLA RNTGYRGHSS SSNTCYEPKS VLELCQSPSC  60
AASEKPAVPT EVSPITDPTA DWEEHVLRNM DWDSIMKDLG LDDDSVPSIK TNSQLTHGGP  120
QIDQQQLIEF APSQQLDSAQ LLQSDFTFAV PDLYSNQNQS VSNFPDFSNN LVNTNGNLSV  180
GFDSIEEIIR AADCFDSNEL QLAQMILARL NQRIRSPAGK PLLRAAFYFK EALNSLLNGL  240
TSPTHLPSWS EIFQSVRAYK AFSGISPIPM FTHFTTTQAL LESLDGSPTL IHIIDFDIGF  300
GGQYASFMRE IAEKAQSCNK LMNPTSLRIT AIVPEEYVTE TKLIKENLIH FAQELRIRFH  360
IEFVLVRSFE MLSFKAVKFM DGEKIAVVLS PTIFRRLGST NNAVGFVTNL RRLSPSVVVF  420
VDNEGWTECG ATPLFRRNFV NSLEYYTMVF ESLDAAVGDA EWARKIEMYL LKPRIKAAVE  480
VAGRRVAPWR EVFSGAGMRP MQLSQFADYQ AECLLAKLQV GGFHVAKQQT ELVLCWHQWA  540
LVATSAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-2519054724377Protein SCARECROW
5b3h_D2e-2519054724377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425721.10.0scarecrow-like protein 15
RefseqXP_006466756.10.0scarecrow-like protein 15
SwissprotO232101e-169SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A2H5NRP70.0A0A2H5NRP7_CITUN; Uncharacterized protein
STRINGXP_006466756.10.0(Citrus sinensis)
STRINGXP_006425721.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-159GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]