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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Neem_1389_f_1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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| Family | GRAS | ||||||||
| Protein Properties | Length: 549aa MW: 61352.7 Da PI: 6.1479 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 304 | 3.7e-93 | 186 | 548 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97
e ++++A++++s++l+laq +Larl+++ +sp+g+p+ R+a+yf+eAL++ l++ + p+ s+++ +++ a+k+fs +sPi+ f+h+t
Neem_1389_f_1 186 EEIIRAADCFDSNELQLAQMILARLNQRiRSPAGKPLLRAAFYFKEALNSLLNG------LTSPTHLPSWSEIFQSVRAYKAFSGISPIPMFTHFT 275
6789***********************99*************************......34466666677799********************** PP
GRAS 98 aNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpeg......ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
+ qa+le+++g+ + +HiiDfdi+ G+Q++++++++a+++++ p slRiT+++++e +e++ ++e+L +fA+el+++f++++++++++
Neem_1389_f_1 276 TTQALLESLDGSpTLIHIIDFDIGFGGQYASFMREIAEKAQScnklmnPTSLRITAIVPEE--YVTETKLIKENLIHFAQELRIRFHIEFVLVRSF 369
************8889***********************94444555489*********66..99999**************************** PP
GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklpres 279
e+l++++ ++ gE++aV l+ ++r l ++ + ++ +++lsP vvv+v++e +++ ++ F + f+++leyy+++f+sl+a + ++
Neem_1389_f_1 370 EMLSFKAVKFMDGEKIAVVLSPTIFRRLGSTNNAVG----FVTNLRRLSPSVVVFVDNEgwTECgATPLFRRNFVNSLEYYTMVFESLDAAV-GDA 460
****************************66666666....*******************76677556679999*****************97.678 PP
GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
e+++k+E ll+++i+ +v +g++ ++ Wre ++ aG++p++ls++a qa++ll+k ++ g++v +++ +lvl+W++ +Lv++SaWr
Neem_1389_f_1 461 EWARKIEMYLLKPRIKAAVEVAGRR-------VAPWREVFSGAGMRPMQLSQFADYQAECLLAKLQVGGFHVAKQQTELVLCWHQWALVATSAWR 548
999********************98.......89************************************************************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 38.185 | 158 | 528 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 1.3E-90 | 186 | 548 | IPR005202 | Transcription factor GRAS |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0030154 | Biological Process | cell differentiation | ||||
| GO:0048831 | Biological Process | regulation of shoot system development | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 549 aa Download sequence Send to blast |
MRVPPKSPQN SQSHNPKPVS NSNNSNVSLA RNTGYRGHSS SSNTCYEPKS VLELCQSPSC 60 AASEKPAVPT EVSPITDPTA DWEEHVLRNM DWDSIMKDLG LDDDSVPSIK TNSQLTHGGP 120 QIDQQQLIEF APSQQLDSAQ LLQSDFTFAV PDLYSNQNQS VSNFPDFSNN LVNTNGNLSV 180 GFDSIEEIIR AADCFDSNEL QLAQMILARL NQRIRSPAGK PLLRAAFYFK EALNSLLNGL 240 TSPTHLPSWS EIFQSVRAYK AFSGISPIPM FTHFTTTQAL LESLDGSPTL IHIIDFDIGF 300 GGQYASFMRE IAEKAQSCNK LMNPTSLRIT AIVPEEYVTE TKLIKENLIH FAQELRIRFH 360 IEFVLVRSFE MLSFKAVKFM DGEKIAVVLS PTIFRRLGST NNAVGFVTNL RRLSPSVVVF 420 VDNEGWTECG ATPLFRRNFV NSLEYYTMVF ESLDAAVGDA EWARKIEMYL LKPRIKAAVE 480 VAGRRVAPWR EVFSGAGMRP MQLSQFADYQ AECLLAKLQV GGFHVAKQQT ELVLCWHQWA 540 LVATSAWRC |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5b3h_A | 2e-25 | 190 | 547 | 24 | 377 | Protein SCARECROW |
| 5b3h_D | 2e-25 | 190 | 547 | 24 | 377 | Protein SCARECROW |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. | |||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_006425721.1 | 0.0 | scarecrow-like protein 15 | ||||
| Refseq | XP_006466756.1 | 0.0 | scarecrow-like protein 15 | ||||
| Swissprot | O23210 | 1e-169 | SCL15_ARATH; Scarecrow-like protein 15 | ||||
| TrEMBL | A0A2H5NRP7 | 0.0 | A0A2H5NRP7_CITUN; Uncharacterized protein | ||||
| STRING | XP_006466756.1 | 0.0 | (Citrus sinensis) | ||||
| STRING | XP_006425721.1 | 0.0 | (Citrus clementina) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM4291 | 28 | 57 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G36710.1 | 1e-159 | GRAS family protein | ||||
| Publications ? help Back to Top | |||
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