PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_13954_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

TCP

Protein Properties

Length: 239aa MW: 25513.6 Da PI: 5.6254

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_13954_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	89.4	7.8e-28	1	95	24	89
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.............................k 89 ++a+caar+F+L++eLG+++d++tieWLlqqa+p+i+++tgt++++a+++ ++s +ss+s+ s + + Neem_13954_f_1 1 MPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSIIAATGTGTIPANFSsLNVSLRSSGSS-SLSlsssksaplsfhgalplysnnnggfgvafH 95 9**********************************************888755555555552.222223334455555565565555555544331 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	21.241	1	39	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	3.5E-26	1	103	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MPALCAARVF QLTRELGHKS DGETIEWLLQ QAEPSIIAAT GTGTIPANFS SLNVSLRSSG 60 SSSLSLSSSK SAPLSFHGAL PLYSNNNGGF GVAFHHNHHQ FYHQHQPNSG DHHHYFFRED 120 LFKESSDHQR NAPETASVAT VIAANAGPNA FWMLPAGGSG GAGSDPQMWS TFPAAQNYSL 180 GSLFANQQQI GGQQSNNIGV TAAYSNSNSG RAAELAMNLE QDHQENNQVS DSGEEDSQE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022719790.1	8e-63	transcription factor TCP23-like
TrEMBL	A0A061FIV6	2e-59	A0A061FIV6_THECC; TCP family transcription factor, putative
STRING	EOY17245	4e-60	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7053	24	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	1e-27	TCP family protein