PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_1400_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bZIP

Protein Properties

Length: 328aa MW: 36718.7 Da PI: 5.8462

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_1400_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.3	4.4e-10	126	181	5	60
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l + l Neem_1400_f_2 126 KRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLS 181 9*****************************************99887766666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.2E-16	122	186	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.795	124	187	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.9E-9	126	183	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.9E-10	126	181	No hit	No description
SuperFamily	SSF57959	8.44E-11	126	178	No hit	No description
CDD	cd14703	7.48E-24	127	176	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MENRDPPNPN SNPPTRGPYH RRSQSEVQYR IPDDLDLVSD PLFDGIGGSE DDLFCSYMDI 60 EKIGSNPAGD DPKQENANVN AGARPRHRYS NSVDGSTSTS SILESIEAKK AMDPDKLAEL 120 WTVDPKRAKR ILANRQSAAR SKERKARYIS ELERKVQTLQ TEATTLSAQL TLFQRDTTDL 180 STENTELKLR LQAMEQQAQL RDALNEALKK EVERLKIATG EIMTPTDTYN FGMHHIPYNQ 240 SLFYPHQPQP GTGDPQNVQM QQFHSFQPNM SSAPHQPMLP TANSHAFSEM LQQDPLGRLQ 300 GLDINGRNTH LVKSEGPSIS ASESSSTF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006435914.1	0.0	bZIP transcription factor 18
Refseq	XP_006486172.1	0.0	bZIP transcription factor 18
Swissprot	O22873	1e-121	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A067DWF7	0.0	A0A067DWF7_CITSI; Uncharacterized protein
STRING	XP_006486172.1	0.0	(Citrus sinensis)
STRING	XP_006435914.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4042	27	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-113	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]