PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_14014_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family Dof
Protein Properties Length: 245aa    MW: 26755.5 Da    PI: 6.5023
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_14014_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof73.52.8e-238442763
          zf-Dof 27 sqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
                    +qPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss
  Neem_14014_f_1  8 HQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 44
                    7********************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088418.156141IPR003851Zinc finger, Dof-type
PfamPF027016.2E-18741IPR003851Zinc finger, Dof-type
ProDomPD0074787.0E-11936IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDASSGQHQP RYFCKSCRRY WTKGGTLRNV PVGGGCRKNK RSSSSSKRSQ DQQLSSNTNP  60
LNGFPQMSYD SNDLSLAFAR LQKQTGGQLG FDHENDFSIL GNPTTTHCDI LGNPSISSAS  120
AATPPFLDAL RSGFLDTQNN FQNLYYGYGT GNMGEMDNNG VGVSAEMLMP FGDQMSSNAT  180
TTAVTVTTMK QELCNSRESE NKVLWGFPWQ LNADANMGNE LDSGKESWNT GLTSTWHGLL  240
NSPLM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020214603.11e-112dof zinc finger protein DOF2.1
TrEMBLA0A0K8K6351e-109A0A0K8K635_CAJCA; Dof protein
TrEMBLA0A151TN621e-110A0A151TN62_CAJCA; Dof zinc finger protein DOF2.1 (Fragment)
STRINGXP_002532252.11e-108(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69602743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28510.16e-29Dof family protein