PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_14063_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ERF
Protein Properties Length: 257aa    MW: 28701.1 Da    PI: 5.7357
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_14063_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.76e-1854104256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      ykGVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a ++++g+
  Neem_14063_f_1  54 TYKGVRMRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVASLAIKGH 104
                     69****998.**********843...6*********************9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.44554111IPR001471AP2/ERF domain
SMARTSM003803.4E-3554117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.6E-3154112IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-2154112IPR016177DNA-binding domain
PfamPF008473.3E-1254104IPR001471AP2/ERF domain
CDDcd000181.20E-3055111No hitNo description
PRINTSPR003673.0E-105566IPR001471AP2/ERF domain
PRINTSPR003673.0E-107793IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-7120146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDSAESQISN SFSTSEKKQS KQAKEMMSNT VEEKEGKKMC KKIGSNKNNL KHPTYKGVRM  60
RSWGKWVSEI REPRKKSRIW LGTFPTAEMA ARAHDVASLA IKGHLAQLNF PQLADELPPT  120
AEMAARAHDV ASLAIKGHLA QLNFPQLADE LPRPASSAPK DIRAAAAKAA AAAISDQSRR  180
VEANLDRSLQ NEGDDEESRS LIAEDVGENN AWFDNLPDLS LEDDSKYGFC YSSWWQQAGL  240
LFDDIGFQQF EERLCWD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1644112473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006490227.19e-64ethylene-responsive transcription factor ERF039-like
TrEMBLA0A2H5QEA54e-64A0A2H5QEA5_CITUN; Uncharacterized protein
STRINGXP_006421614.12e-64(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-39ERF family protein