PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_14065_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

M-type_MADS

Protein Properties

Length: 111aa MW: 12757.1 Da PI: 10.9008

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_14065_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	101	4.4e-32	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELS+LCdaeva+iifs++gklye++s Neem_14065_f_1 9 KRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	33.347	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.2E-41	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	7.04E-38	2	61	No hit	No description
SuperFamily	SSF55455	2.49E-30	2	61	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.4E-33	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.2E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.4E-33	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.4E-33	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 111 aa Download sequence Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSILCD AEVALIIFSN RGKLYEFCST 60 SRLLIKDGSL FGKSSVSVVF CTRSVLLIHA LFHSEILKES HRLRMNFLIN V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	6e-20	1	61	1	61	MEF2 CHIMERA
6byy_B	6e-20	1	61	1	61	MEF2 CHIMERA
6byy_C	6e-20	1	61	1	61	MEF2 CHIMERA
6byy_D	6e-20	1	61	1	61	MEF2 CHIMERA
6bz1_A	6e-20	1	61	1	61	MEF2 CHIMERA
6bz1_B	6e-20	1	61	1	61	MEF2 CHIMERA
6bz1_C	6e-20	1	61	1	61	MEF2 CHIMERA
6bz1_D	6e-20	1	61	1	61	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	MADS-box transcription factor that acts redundantly with J2 to control meristem maturation and inflorescence architecture. {ECO:0000269\|PubMed:28528644}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ394059	4e-57	GQ394059.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS1024 SSR marker CGR6437 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021285782.1	6e-38	MADS-box protein CMB1-like
Swissprot	Q7Y040	5e-38	EJ2_SOLLC; MADS-box protein EJ2
TrEMBL	S8D4L4	2e-36	S8D4L4_9LAMI; Uncharacterized protein
STRING	POPTR_0004s11450.1	4e-37	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM78	28	413

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24260.3	2e-39	MIKC_MADS family protein

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Soyk S, et al. Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene. Cell, 2017. 169(6): p. 1142-1155.e12 [PMID:28528644]