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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Neem_14107_f_1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 209aa MW: 23501.8 Da PI: 5.9587 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 26.6 | 1.4e-08 | 3 | 27 | 23 | 48 |
-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
+W++Ia +++ gRt++++k++w+++l
Neem_14107_f_1 3 RWALIAGRIP-GRTDNEIKNYWNSHL 27
4*********.************986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 16.717 | 1 | 31 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 1.55E-7 | 3 | 36 | IPR009057 | Homeodomain-like |
| CDD | cd00167 | 1.35E-6 | 3 | 27 | No hit | No description |
| Pfam | PF00249 | 1.3E-6 | 3 | 27 | IPR001005 | SANT/Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 1.5E-11 | 3 | 27 | IPR009057 | Homeodomain-like |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 209 aa Download sequence Send to blast |
MVRWALIAGR IPGRTDNEIK NYWNSHLSKK LISQGIDPRT HKPLNLNPAS SEQEQDHHLA 60 SRSNPNPNPP PLQIEETPRI SSQQATNFAT NPQKNYEPII NNDISMDGFI INHGDYIENY 120 NEDTFSSFLD SLLNDNVFVN QQHQLPQPPT PPHPNVVVSS THRSLVSSSS AQTSFNYSNW 180 EADQIVSTMV ALGDNHEQTA AAFNNHRTI |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_023891874.1 | 3e-44 | transcription repressor MYB5-like | ||||
| TrEMBL | A0A1Q3CFF9 | 7e-45 | A0A1Q3CFF9_CEPFO; Myb_DNA-binding domain-containing protein | ||||
| STRING | POPTR_0013s05300.1 | 4e-40 | (Populus trichocarpa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM21085 | 3 | 5 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G13540.1 | 1e-23 | myb domain protein 5 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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