PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_14162_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Dof

Protein Properties

Length: 226aa MW: 24373.9 Da PI: 8.6697

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_14162_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.3	9.6e-40	17	76	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++lkcprCds+ntkfCyynny+lsqPr+fCk+CrryWtkGGalrn+PvGgg+rkn++++ Neem_14162_f_2 17 MEQLKCPRCDSSNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGTRKNNTKK 76 5789****************************************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-29	11	75	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.3E-33	19	74	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.469	20	74	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	22	58	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MQDPKAFQPM KPHFPEMEQL KCPRCDSSNT KFCYYNNYNL SQPRHFCKNC RRYWTKGGAL 60 RNIPVGGGTR KNNTKKRQKP DPDPPRNNHP ARKGQECSRP GIAAGSATTS QEAVGGTDTD 120 PRRLYGLGVD PDHKMLDITG SFSSLLASNG GIGSVLDGMN SNGSGLKMVQ MGSFGENFGS 180 GPNLESFPDG GSGSENQGNN GDSSCWSGGN NGWPDLAIYT PSSNFQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00199	DAP	Transfer from AT1G51700	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM476036	8e-43	AM476036.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X057671.24, clone ENTAV 115.
GenBank	FQ383028	8e-43	FQ383028.1 Vitis vinifera clone SS0ABG34YI09.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006426477.1	1e-119	dof zinc finger protein DOF3.1
Swissprot	O82155	6e-45	DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBL	A0A067EU65	1e-118	A0A067EU65_CITSI; Uncharacterized protein
TrEMBL	A0A2H5NEV0	1e-118	A0A2H5NEV0_CITUN; Uncharacterized protein
TrEMBL	V4SGK2	1e-118	V4SGK2_9ROSI; Uncharacterized protein
STRING	XP_006426477.1	1e-118	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1269	28	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	8e-47	DOF zinc finger protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]