PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_1417_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bZIP
Protein Properties Length: 613aa    MW: 66420.7 Da    PI: 7.1912
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_1417_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.22.6e-11432486559
                    CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                    kr++r   NR +A rs +RK  +i eLe kv++L++e ++L  +l  l+ ++++l
  Neem_1417_f_2 432 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQFLICAL 486
                    9********************************************9998887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.0E-12428492IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.002430480IPR004827Basic-leucine zipper domain
PfamPF001709.2E-10432480IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.43E-11432486No hitNo description
Gene3DG3DSA:1.20.5.1703.3E-11432486No hitNo description
CDDcd147032.92E-24433480No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MGETEDGNGN TDMMQRIQSS FGTSSSSIPK QQTLLSTNQL DIPQLNPNHI RARHFSQFAT  60
NFGGDSSKRA GIPPSHPNQI PPISPYSLIP GARQANQQMG SQGFSPGPTH SRSLSQPSSF  120
FSLDSLPPLS PSPFRDSPST SMSDQVSADV SMEDRDGNSH SLLPPSPFSR GNASRIGESL  180
PPRNKHRRSN SDIPFGFSTV MQSSPPLISP KVAGGLDRLG SGKENSGVAK PAQLVKKESS  240
WERGGDNNAE GMGERKSEGE VVDDLFSAYM NLDNIDALNS SGTDDKNGNE NREDLDSRAS  300
GTKTNGGDSS DNEAESSVNE SGNSLPRAGI NPSAEKREGI KRTAGGDVAP TSRHYRSVSM  360
DSFMGKLNFG DESPKLPPSP GTRPGQLSPS NSIDANSPAF SLEFGNGEFS GAELKKIMAN  420
EKLAEIALTD PKRAKRILAN RQSAARSKER KMRYISELEH KVQTLQTEAT TLSAQLTLLQ  480
FLICALNLNS LMLYAAFTSN YITFDAASKK ISRMHIYNCS IVTALNEALT AEVRRLKLAT  540
QEITSDSDPS KGMVTQQQLP INSQMFQLHQ QQSSQLNMHQ LQQQHQKSHS QGLCRESQML  600
SKTDAEAPAV CYI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006471421.10.0uncharacterized protein LOC102624958
RefseqXP_006487269.10.0uncharacterized protein LOC102620948
RefseqXP_006493636.10.0uncharacterized protein LOC102613352
TrEMBLA0A2H5QG980.0A0A2H5QG98_CITUN; Uncharacterized protein
STRINGXP_006471421.10.0(Citrus sinensis)
STRINGXP_006487269.10.0(Citrus sinensis)
STRINGXP_006493636.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42242757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.31e-139bZIP family protein