PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_14534_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NAC

Protein Properties

Length: 297aa MW: 33237.5 Da PI: 9.1673

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_14534_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	108.6	7.6e-34	60	200	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk...... 79 lp+G++F+Ptd+el+ e+L+ kv+++ ++ e +++ +i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+++ Neem_14534_f_2 60 LPAGVKFDPTDQELL-EHLEGKVRADArklhplID--EfipTLEGEnGICYTHPEKLP-GVSKDGLVRHFFHRPSKAYTTGTRKRRKVHtdaegg 150 799**********.99*999956643322..22222333336******.555666688**************744446555 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g kk+Lv+y g+++k+ekt+Wvmh+y+l Neem_14534_f_2 151 ETRWHKTGKTRPVFV-SGKVKGYKKILVLYtnYGKQKKPEKTNWVMHQYHL 200 778********.999*******6658999**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-38	53	219	IPR003441	NAC domain
PROSITE profile	PS51005	34	60	219	IPR003441	NAC domain
Pfam	PF02365	6.2E-16	61	200	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MTWCNDCSDV QTVEATSSPP SSTNHINTSK AKTCLIRSCP SCGHQIKCNE QARIHDLPGL 60 PAGVKFDPTD QELLEHLEGK VRADARKLHP LIDEFIPTLE GENGICYTHP EKLPGVSKDG 120 LVRHFFHRPS KAYTTGTRKR RKVHTDAEGG ETRWHKTGKT RPVFVSGKVK GYKKILVLYT 180 NYGKQKKPEK TNWVMHQYHL GNNEEEKDGE LVVSKVFYQT QPRQCGSVMK DNASLPPKYN 240 KGQISGSGHH HEGLKNPAVV EYYNPSFLSF DQGGQNRASP PTLIPHFAAH DTSSFIP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-12	60	200	15	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00459	DAP	Transfer from AT4G28500	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002517849.1	1e-178	NAC domain-containing protein 73
Swissprot	O49459	1e-130	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	B9RVT0	1e-177	B9RVT0_RICCO; Transcription factor, putative
STRING	XP_002517849.1	1e-178	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2012	28	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-133	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]