PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_14716_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 441aa    MW: 48696.7 Da    PI: 8.5465
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_14716_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.2e-12374419655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L++l P++    +k  + a++L +AveYIk+Lq
  Neem_14716_f_1 374 SIAERVRRTRISERMRKLQDLFPNL----DKQTNTADMLDLAVEYIKDLQ 419
                     689*********************9....788*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.532368418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-15371431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.37E-12372423No hitNo description
Gene3DG3DSA:4.10.280.102.8E-14373431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-11374424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.7E-9374419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MMYGFAGLQG FPGKMSLLYS HNFKYPEGDL RKNQEFMDSS PHYHQENYNQ QHNSGLTRFR  60
SAPSSFLESL ANGSNSNNSG GGNNCEDFRY FRPSSPEIDT FLAKYMIPSN GSGDSGSHDL  120
LEFGEKTMKQ EESEYSNGSS QMIYQNLPVH SFANDNSVGV GNTVDNSFGV VSSIAMENSM  180
QEKIAAGNGS NNLIRQNSSP AGLFSNLGVD NGYGVMRDVG CFRAGSGTNG ETSTSTSRLN  240
NNINFSSGTS TRFMPQIAEH GNQTIRTSSP EKSLGGNNGS SRQYMSNFTH DTWDSTPFSG  300
IKRVRDNDSN IFFGINASET QNGNSGNQTT RLTHHLSLPK TSAEMAAVEK FLHFQGSVPC  360
KIRAKRGCAT HPRSIAERVR RTRISERMRK LQDLFPNLDK QTNTADMLDL AVEYIKDLQK  420
QVKTLTDNKA KCTCSSKQKQ Y
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006482911.10.0transcription factor bHLH130-like
RefseqXP_006482912.10.0transcription factor bHLH130-like
TrEMBLA0A2H5N9Q10.0A0A2H5N9Q1_CITUN; Uncharacterized protein
STRINGXP_006482911.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1673789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-72bHLH family protein