PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_14718_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

ERF

Protein Properties

Length: 179aa MW: 20286 Da PI: 8.3148

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_14718_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55	2.1e-17	32	82	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + ykGVr+ ++g+Wv+e+r+p +k+ r++lg+f ++++Aa+a++ a+++l+ge Neem_14718_f_1 32 PVYKGVRR--RNGKWVCELREP---NKKSRIWLGTFSSPDMAARAYDVAALALRGE 82 68**85..47*****8...347************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	2.1E-12	32	82	IPR001471	AP2/ERF domain
SMART	SM00380	4.8E-30	33	95	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	20.323	33	89	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.51E-19	33	90	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	3.1E-28	33	90	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.8E-7	34	45	IPR001471	AP2/ERF domain
CDD	cd00018	1.71E-28	34	91	No hit	No description
PRINTS	PR00367	1.8E-7	71	91	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MENIKDQSSS SSKAFCCKRK AGRKKFRETR HPVYKGVRRR NGKWVCELRE PNKKSRIWLG 60 TFSSPDMAAR AYDVAALALR GESASLNFPE TACELPRARS DNVRDIQYAA MEAAVKTSSS 120 LDSSLEMKNQ VFVDEEEVFN MPGILDSMAE ALILTPPAMK NGFKWDDFED TVEFTLWSN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	4e-14	31	90	12	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269\|PubMed:17136305}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269\|PubMed:17136305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018812676.1	3e-80	PREDICTED: dehydration-responsive element-binding protein 1B-like
Swissprot	A2WZI4	2e-50	DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
Swissprot	Q8S9Z5	2e-50	DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBL	A0A2I4DZW6	8e-79	A0A2I4DZW6_JUGRE; dehydration-responsive element-binding protein 1B-like
STRING	XP_006481833.1	2e-76	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM355	28	187

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25470.1	7e-41	C-repeat/DRE binding factor 2

Publications ? help Back to Top
Wang Q, et al. Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice. Plant Mol. Biol., 2008. 67(6): p. 589-602 [PMID:18470484] Liu HH,Wang YG,Wang SP,Li HJ Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses. Genet. Mol. Res., 2015. 14(1): p. 2331-40 [PMID:25867379]