PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_1478_f_4
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 348aa    MW: 38436.1 Da    PI: 9.681
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_1478_f_4genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.21.9e-1376120147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
    Neem_1478_f_4  76 RESWTEQEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 120
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.94E-1670126IPR009057Homeodomain-like
PROSITE profilePS5129414.98671125IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.0E-774126IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-1874123IPR006447Myb domain, plants
SMARTSM007177.9E-1175123IPR001005SANT/Myb domain
PfamPF002493.9E-1176120IPR001005SANT/Myb domain
CDDcd001672.47E-878121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MVSVNPNRAQ GFFFFDPMNM VHPGLNSLRP TNNYNSTATS TTTTTASTKS ANSNTMSFME  60
DPSKKIRKPY TITKSRESWT EQEHDKFLEA LQLFDRDWKK IEAFIGSKTV IQIRSHAQKY  120
FLKVQKNGTS EHVPPPRPKR KAAHPYPQKA PKTTPGVSQI GGSFQSSAAL LEPGYIYRPD  180
SSSSLPGNPI PGAALSSWSY NSVPPVSVSQ VTKDDVGLAG PTIPQNCCYS SSNESTPRTW  240
SAAETIDRGN QGKPPRVMPD FSQVYSFLGS VFDPNATGHI QRLKQMDPIN FETVLLLMKN  300
LAINLTSPEF ENHRTLLSVY DTESQRNRFG SPCDNLHAGK SESAIPSA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU9477692e-35KU947769.1 Toxicodendron vernicifluum microsatellite c26331 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444958.10.0protein REVEILLE 3
RefseqXP_006491181.10.0protein REVEILLE 3
SwissprotQ6R0H01e-113RVE3_ARATH; Protein REVEILLE 3
TrEMBLA0A067H3830.0A0A067H383_CITSI; Uncharacterized protein
TrEMBLA0A2H5PGE80.0A0A2H5PGE8_CITUN; Uncharacterized protein
TrEMBLV4TD210.0V4TD21_9ROSI; Uncharacterized protein
STRINGXP_006491181.10.0(Citrus sinensis)
STRINGXP_006444958.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12902893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01520.16e-98MYB_related family protein
Publications ? help Back to Top
  1. Manfield IW, et al.
    Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis.
    Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9
    [PMID:16845059]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]